yosuken / ViPTreeGen
a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree
☆25Updated 2 years ago
Alternatives and similar repositories for ViPTreeGen:
Users that are interested in ViPTreeGen are comparing it to the libraries listed below
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆18Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 2 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆23Updated 3 months ago
- ☆26Updated this week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 6 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆30Updated 5 months ago
- ☆31Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆41Updated last month
- Pipeline for metagenome and metatranscriptome joint assembly☆19Updated last year
- Prophage Activity Estimator☆26Updated 8 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 9 months ago
- ☆19Updated 2 years ago
- IslandPath standalone software☆31Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆17Updated last year
- Unified Human Gut Virome Catalog☆27Updated 6 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 6 months ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- ☆16Updated 4 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last week
- MAG Circularization Method☆33Updated 2 years ago
- viralFlye pipeline☆18Updated 5 months ago
- KEGG Module Evaluation Tool☆28Updated last year
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆12Updated 4 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆25Updated 2 months ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆37Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 3 months ago