a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree
☆35Sep 20, 2022Updated 3 years ago
Alternatives and similar repositories for ViPTreeGen
Users that are interested in ViPTreeGen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Sep 2, 2021Updated 4 years ago
- ☆25Jun 20, 2023Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆23Mar 22, 2024Updated 2 years ago
- Virus Identification☆25May 26, 2025Updated 9 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Mar 25, 2025Updated 11 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆86Dec 27, 2024Updated last year
- Systematic search of all known anti-phage systems.☆149Jan 22, 2026Updated 2 months ago
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated last month
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Nov 2, 2025Updated 4 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆147Mar 4, 2026Updated 3 weeks ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆106May 23, 2025Updated 10 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 3 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- ☆34Oct 6, 2025Updated 5 months ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 4 months ago
- ☆15May 22, 2025Updated 10 months ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆22Jun 6, 2023Updated 2 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 2 weeks ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Improvement of metagenome-assembled genomes☆55Mar 17, 2020Updated 6 years ago
- Python bindings for the TaxonKit library☆43Feb 2, 2026Updated last month
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Sep 8, 2025Updated 6 months ago
- Identifying viruses from metagenomic data by deep learning☆150Jun 1, 2025Updated 9 months ago
- ☆22Dec 9, 2023Updated 2 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆65Mar 4, 2026Updated 2 weeks ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆41Aug 9, 2023Updated 2 years ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 2 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆80Apr 16, 2025Updated 11 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year