Benson-Genomics-Lab / IRFLinks
Inverted Repeats Finder: a program to analyze DNA and RNA sequences
☆20Updated 9 months ago
Alternatives and similar repositories for IRF
Users that are interested in IRF are comparing it to the libraries listed below
Sorting:
- Python bindings for the TaxonKit library☆41Updated last week
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- ☆31Updated 4 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated last month
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 3 weeks ago
- Add biological annotations to variants in a given VCF file.☆32Updated 4 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆37Updated 3 months ago
- Find Unique genomic Regions☆32Updated last month
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Automatically design multiplex PCR primer pairs for diverse templates☆30Updated last year
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- Convert genbank files to a swath of other formats☆23Updated 2 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- ☆13Updated last year
- A package to annotate protein sequences☆60Updated 9 months ago
- Python3 module for running MUMmer and reading the output☆33Updated 8 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 4 months ago
- ☆52Updated 7 months ago
- k-mer similarity analysis pipeline☆23Updated 3 weeks ago
- finding conserved regions in highly diverse genomes☆15Updated 6 months ago
- ☆42Updated last year
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 6 months ago
- Compute strain abundance in a defined microbial community☆10Updated 2 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Updated 2 years ago