Benson-Genomics-Lab / IRF
Inverted Repeats Finder: a program to analyze DNA and RNA sequences
☆16Updated last month
Alternatives and similar repositories for IRF:
Users that are interested in IRF are comparing it to the libraries listed below
- Find Unique genomic Regions☆29Updated 2 weeks ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 2 months ago
- ☆31Updated 3 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last month
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- ☆13Updated last year
- finding conserved regions in highly diverse genomes☆15Updated 8 months ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆12Updated 2 weeks ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last month
- Python bindings for the TaxonKit library☆36Updated this week
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆21Updated 5 months ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆12Updated 2 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆34Updated 2 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated last year
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆25Updated this week
- Variant call verification☆16Updated 2 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆29Updated 3 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- software to identify primers that can distinguish genomes☆21Updated 2 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 3 years ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Updated 7 months ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 3 months ago