Inverted Repeats Finder: a program to analyze DNA and RNA sequences
☆22Feb 21, 2025Updated last year
Alternatives and similar repositories for IRF
Users that are interested in IRF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scalable high-throughput short-read open reading frame prediction☆12Jan 13, 2017Updated 9 years ago
- ☆20Jan 13, 2026Updated 6 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆216Jan 16, 2023Updated 3 years ago
- Metagenomic Analysis in Real Time☆31Jul 7, 2026Updated last month
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- FLASH (Fast Length Adjustment of SHort reads); mirror of https://git.code.sf.net/p/flashpage/code☆14Mar 6, 2018Updated 8 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆94May 3, 2025Updated last year
- RNA virus analysis toolkit☆22Updated this week
- Predict DNA assembly clone validity rates - powered by Kappa☆10Jul 24, 2020Updated 6 years ago
- ☆13Sep 20, 2024Updated last year
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated last year
- Command Line Interface for Genomes on a Tree.☆14Mar 15, 2026Updated 4 months ago
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆22Jul 17, 2026Updated 3 weeks ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- ☆18Oct 7, 2024Updated last year
- 🧬Genomes to proteins, multi-level visualization library☆16May 22, 2026Updated 2 months ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆22Jun 22, 2026Updated last month
- map Illumina metagenomes to genomes!☆39Jan 22, 2026Updated 6 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 2 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 4 years ago
- Structural variant caller for low-depth long-read sequencing data☆49Feb 5, 2026Updated 6 months ago
- MFannot is a program for the annotation of mitochondrial and plastid genomes☆24Oct 2, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15May 22, 2025Updated last year
- Python module to manipulate and visualize minimap2's cs tag☆11Jul 28, 2024Updated 2 years ago
- The Functional Analysis through Hidden Markov Models Software and Server☆14Nov 6, 2014Updated 11 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 10, 2026Updated last month
- BLAST-Like Alignment Tool☆23Jan 11, 2019Updated 7 years ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆24Apr 20, 2025Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated 2 years ago
- ☆40Jun 19, 2023Updated 3 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Integrative virome pipeline☆14Nov 4, 2024Updated last year
- k-mer-based non-Bayesian Taxonomic Classifier☆20May 28, 2026Updated 2 months ago
- Distance-based Phylogenetic Placer☆22Jul 13, 2026Updated 3 weeks ago
- Set of tools for viral metagenomics.☆17Jun 1, 2026Updated 2 months ago
- A Julia package for handle genome graph in the GFA format.☆11Sep 2, 2022Updated 3 years ago
- Repo for advertising and organizing VICC, CGC, CIViC, & ClinGen Somatic: Variant Curation & Coding Unconference/meeting activities☆10Jun 2, 2026Updated 2 months ago
- More scalable dereplication for metagenome assembled genomes☆87Updated this week