Inverted Repeats Finder: a program to analyze DNA and RNA sequences
☆21Feb 21, 2025Updated last year
Alternatives and similar repositories for IRF
Users that are interested in IRF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scalable high-throughput short-read open reading frame prediction☆12Jan 13, 2017Updated 9 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆204Jan 16, 2023Updated 3 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36Sep 20, 2022Updated 3 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- Metagenomic Analysis in Real Time☆29Feb 25, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- FLASH (Fast Length Adjustment of SHort reads); mirror of https://git.code.sf.net/p/flashpage/code☆13Mar 6, 2018Updated 8 years ago
- Predict DNA assembly clone validity rates - powered by Kappa☆10Jul 24, 2020Updated 5 years ago
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated 8 months ago
- ☆13Sep 20, 2024Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆92May 3, 2025Updated 11 months ago
- 🧬Genomes to proteins, multi-level visualization library☆14Feb 25, 2026Updated last month
- ☆17Oct 7, 2024Updated last year
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- MFannot is a program for the annotation of mitochondrial and plastid genomes☆22Oct 2, 2023Updated 2 years ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 2 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- Structural variant caller for low-depth long-read sequencing data☆48Feb 5, 2026Updated 2 months ago
- Python module to manipulate and visualize minimap2's cs tag☆11Jul 28, 2024Updated last year
- Command Line Interface for Genomes on a Tree.☆13Mar 15, 2026Updated 3 weeks ago
- The Functional Analysis through Hidden Markov Models Software and Server☆14Nov 6, 2014Updated 11 years ago
- Wavefront alignment algorithm (WFA) in Golang☆31Jul 26, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Set of tools for viral metagenomics.☆14Jan 21, 2026Updated 2 months ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Aug 9, 2022Updated 3 years ago
- BLAST-Like Alignment Tool☆23Jan 11, 2019Updated 7 years ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆23Apr 20, 2025Updated 11 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated last year
- ☆40Jun 19, 2023Updated 2 years ago
- An easy way of MLSTyping your genomes in R.☆19Dec 21, 2020Updated 5 years ago
- A Julia package for handle genome graph in the GFA format.☆11Sep 2, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 11 months ago
- ☆26Jun 26, 2025Updated 9 months ago
- ☆15May 22, 2025Updated 10 months ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- mdust from DFCI Gene Indices Software Tools (archived for a historical record only)☆11Jan 2, 2015Updated 11 years ago
- geNomad: Identification of mobile genetic elements☆297Mar 29, 2026Updated last week
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago