Alternatives and similar repositories for IRF

Users that are interested in IRF are comparing it to the libraries listed below

• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆40Updated 4 months ago
• gamcil / clustermap.js
  ☆31Updated 4 years ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆25Updated 2 years ago
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆70Updated 4 months ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆27Updated 2 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆30Updated this week
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated 2 years ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated last month
• SushiLab / mVIRs
  ☆13Updated last year
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆22Updated 4 years ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆64Updated last month
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆25Updated 4 months ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆20Updated 2 years ago
• Ecogenomics / gtdb-species-clusters
  Toolkit for establishing, updating, and validating GTDB species clusters
  ☆20Updated last week
• balabanmetin / uDance
  ☆42Updated last year
• rpetit3 / vcf-annotator
  Add biological annotations to variants in a given VCF file.
  ☆32Updated 4 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• LKremer / MSA_trimmer
  Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
  ☆17Updated 6 years ago
• AGIScuipeng / PMPrimer
  Automatically design multiplex PCR primer pairs for diverse templates
  ☆30Updated last year
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆35Updated 2 months ago
• BackofenLab / CRISPRcasIdentifier
  Machine learning for accurate identification and classification of CRISPR-Cas systems
  ☆23Updated 10 months ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆60Updated 8 months ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆23Updated 2 weeks ago
• FischbachLab / ninjaMap
  Compute strain abundance in a defined microbial community
  ☆10Updated 2 years ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆35Updated 3 years ago
• sgivan / gb2ptt
  Convert a Genbank flat file to an NCBI ptt file
  ☆17Updated 2 years ago
• steineggerlab / Metabuli-App
  ☆36Updated 3 months ago
• ecbush / xenoGI
  Code for detecting genomic island insertions in clades of microbes.
  ☆19Updated 2 years ago
• quwubin / paired-kmers
  finding conserved regions in highly diverse genomes
  ☆15Updated 4 months ago
• shenwei356 / ictv-taxdump
  NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)
  ☆21Updated 5 months ago