Alternatives and similar repositories for IRF:

Users that are interested in IRF are comparing it to the libraries listed below

• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆33Updated last month
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last month
• kamimrcht / CARNAC-LR
  ☆15Updated 5 years ago
• redsnic / WGA-LP
  A pipeline for whole genome assembly
  ☆16Updated 2 years ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆27Updated last month
• LuoGroup2023 / PanTax
  Strain-level taxonomic classification of metagenomic data using pangenome graphs
  ☆23Updated 2 months ago
• quwubin / paired-kmers
  finding conserved regions in highly diverse genomes
  ☆16Updated 6 months ago
• CuiMiao-HIT / miniSNV
  ☆18Updated 2 months ago
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• broadinstitute / GATK-for-Microbes
  ☆25Updated 3 years ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆17Updated 11 months ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆20Updated 4 years ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆26Updated last month
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆23Updated last year
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆17Updated this week
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆21Updated 3 years ago
• kamimrcht / ELECTOR
  ELECTOR: EvaLuator of Error Correction Tools for lOng Reads
  ☆15Updated 3 years ago
• colindaven / guppy_on_slurm
  Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
  ☆15Updated 7 months ago
• cschin / Write_A_Genome_Assembler_With_IPython
  The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python
  ☆31Updated 6 years ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated this week
• GCA-VH-lab / uorf4u
  uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
  ☆13Updated 3 weeks ago
• fhlab / UMIC-seq
  Nanopore UMI-linked consensus sequencing
  ☆13Updated 4 years ago
• dvdylus / read2tree
  ☆20Updated 2 years ago
• maxemil / PhyloMagnet
  screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics
  ☆11Updated 4 years ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• karubiotools / getSequenceInfo
  A Perl script allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories
  ☆12Updated 2 months ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆15Updated last year
• DrMicrobit / mira
  MIRA sequence assembler
  ☆28Updated last month
• BioinformaticsToolsmith / MeShClust2
  MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
  ☆14Updated 3 years ago