CristinaMoraru / VIRIDICLinks
VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.
☆16Updated last year
Alternatives and similar repositories for VIRIDIC
Users that are interested in VIRIDIC are comparing it to the libraries listed below
Sorting:
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated last week
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆32Updated 2 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Prophage Activity Estimator☆26Updated last year
- ☆32Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- ☆32Updated 4 months ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- ☆52Updated 2 weeks ago
- ☆56Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆50Updated last month
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- KEGG Module Evaluation Tool☆30Updated last year
- Virus Protein Family tools☆30Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆70Updated 3 weeks ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Discover and annotate the virome☆44Updated 2 weeks ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆87Updated last month
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 3 months ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆46Updated last week
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 10 months ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆37Updated 2 years ago
- ☆55Updated last year
- Unified Human Gut Virome Catalog☆32Updated last year