CristinaMoraru / VIRIDICLinks
VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.
☆16Updated last year
Alternatives and similar repositories for VIRIDIC
Users that are interested in VIRIDIC are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- ☆33Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Prophage Activity Estimator☆26Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆34Updated last week
- ☆31Updated 7 months ago
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- KEGG Module Evaluation Tool☆31Updated last year
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆60Updated 5 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- ☆57Updated last year
- Binning Virus Genomes from Metagenomes☆65Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆75Updated 2 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆21Updated 9 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆52Updated 3 months ago
- Discover and annotate the virome☆49Updated 3 weeks ago
- Predict prokaryotic host for phage metagenomic sequences☆51Updated last year
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- ☆24Updated 6 years ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆32Updated 3 years ago
- Unified Human Gut Virome Catalog☆36Updated last week
- Tool to estimate genome quality of microbial eukaryotes☆37Updated last month
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago