CristinaMoraru / VIRIDICLinks
VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.
☆17Updated 2 years ago
Alternatives and similar repositories for VIRIDIC
Users that are interested in VIRIDIC are comparing it to the libraries listed below
Sorting:
- ☆33Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Prophage Activity Estimator☆28Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- ☆31Updated 3 weeks ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated last week
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆54Updated 4 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Updated 4 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆38Updated 3 years ago
- ☆59Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Bacterial GWAS analysis☆45Updated this week
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Updated last year
- Virus Protein Family tools☆30Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Discover and annotate the virome☆53Updated 2 weeks ago
- KEGG Module Evaluation Tool☆32Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- ☆38Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆21Updated 10 months ago
- ☆20Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated 2 weeks ago
- More scalable dereplication for metagenome assembled genomes☆71Updated 3 weeks ago