CristinaMoraru / VIRIDICLinks
VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.
☆15Updated last year
Alternatives and similar repositories for VIRIDIC
Users that are interested in VIRIDIC are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- ☆32Updated 4 months ago
- ☆32Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- Prophage Activity Estimator☆26Updated last year
- Unified Human Gut Virome Catalog☆32Updated 11 months ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 10 months ago
- Discover and annotate the virome☆43Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆69Updated this week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated 2 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆50Updated 3 weeks ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆36Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ☆54Updated last year
- ☆27Updated last year
- ☆54Updated last year
- KEGG Module Evaluation Tool☆30Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- Phage prediction tools☆15Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆32Updated 5 years ago