LorMeBioAI / MBPDLinks
☆16Updated 3 weeks ago
Alternatives and similar repositories for MBPD
Users that are interested in MBPD are comparing it to the libraries listed below
Sorting:
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- ☆17Updated 6 months ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆16Updated 3 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 4 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- ☆22Updated 5 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- ☆18Updated 3 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆13Updated last year
- ☆29Updated 5 months ago
- ☆10Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆16Updated 5 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆14Updated 5 months ago
- Extract metadata from biosamples in NCBI☆14Updated 4 years ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Updated 5 years ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- This is the source code for ARGs-OAP v2.0 construction☆12Updated 5 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated 3 months ago
- ☆20Updated 9 months ago