LorMeBioAI / MBPD
☆15Updated this week
Related projects ⓘ
Alternatives and complementary repositories for MBPD
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated last year
- ☆25Updated 2 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last month
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- ☆21Updated 4 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆14Updated 2 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆29Updated 2 years ago
- ☆45Updated 6 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆24Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- ☆17Updated 2 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆18Updated last year
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 6 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆19Updated 7 years ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated last month
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆22Updated 2 weeks ago
- ☆14Updated 3 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated this week
- Taxonomic classification of viruses at Order and Family level☆18Updated last year
- This is the source code for ARGs-OAP v2.0 construction☆12Updated 5 years ago
- ☆18Updated 2 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆15Updated 3 years ago
- ☆18Updated 2 months ago
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago