☆23Apr 13, 2026Updated last month
Alternatives and similar repositories for MBPD
Users that are interested in MBPD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- Automatically calculate phylogenetic trees from bacterial core genes☆20May 13, 2025Updated last year
- Statistics and visualization for amplicon data☆74Apr 25, 2023Updated 3 years ago
- This is the source code for ARGs-OAP v2.0 construction☆13Aug 1, 2019Updated 6 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆25Apr 24, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A reference viral database (RVDB)☆27Nov 30, 2018Updated 7 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 9 years ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 5 years ago
- Virus Identification☆26May 26, 2025Updated 11 months ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Jun 14, 2022Updated 3 years ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Nov 20, 2019Updated 6 years ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆55Mar 2, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆37Nov 5, 2025Updated 6 months ago
- ☆35Jun 26, 2025Updated 10 months ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆18May 26, 2025Updated 11 months ago
- Primer3Plus is an advanced web interface for primer3.☆46Apr 26, 2025Updated last year
- Microbiota Analysis in R Easily☆12Jul 14, 2022Updated 3 years ago
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆13Jul 4, 2025Updated 10 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36Sep 20, 2022Updated 3 years ago
- A powerful Perl module for simulating the genome digestions by restriction enzymes☆14Sep 10, 2024Updated last year
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago
- ☆15Oct 7, 2025Updated 7 months ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆47Apr 24, 2024Updated 2 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆108May 15, 2020Updated 6 years ago
- A richly featured desktop platform for data analysis of bioinformatics. Especially, for quick sequence annotation and mutation analysis o…☆34Nov 6, 2024Updated last year
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆25Jan 8, 2026Updated 4 months ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- FUNGuild: parsing OTUs into functional guilds☆131Apr 26, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆27Jun 26, 2025Updated 10 months ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- REference Sequence annotation and CuRatIon Pipeline☆98May 11, 2026Updated last week
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 6 years ago
- ☆89May 22, 2024Updated last year
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago