snayfach / MAGpurify
Improvement of metagenome-assembled genomes
☆48Updated 4 years ago
Related projects: ⓘ
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆45Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆44Updated 2 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆41Updated 11 months ago
- MAG Circularization Method☆31Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆44Updated 5 months ago
- Gene Absence Presence Identification tool.☆26Updated last year
- ☆43Updated 5 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆42Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆67Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆23Updated this week
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆24Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆45Updated last year
- ☆15Updated 2 weeks ago
- ☆23Updated 5 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- Discover and annotate the virome☆29Updated 5 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated last week
- ☆37Updated last month
- ☆27Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆46Updated 4 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆17Updated 5 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 3 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- Prophage Activity Estimator☆26Updated 3 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆33Updated 7 months ago
- Binning Virus Genomes from Metagenomes☆55Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆22Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆47Updated 2 years ago