dengzac / contig-extenderLinks
☆22Updated 2 years ago
Alternatives and similar repositories for contig-extender
Users that are interested in contig-extender are comparing it to the libraries listed below
Sorting:
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 9 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- ☆33Updated 2 years ago
- Discover and annotate the virome☆58Updated 2 months ago
- MAGScoT - a MAG scoring and refinement tool☆41Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 3 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆37Updated last month
- Prophage Activity Estimator☆29Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated this week
- Bacterial GWAS analysis☆46Updated 2 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- MAG Circularization Method☆32Updated 2 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆53Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- UFCG: Universal Fungal Core Genes☆34Updated 5 months ago
- IslandPath standalone software☆34Updated 2 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 2 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- ☆24Updated 11 months ago