dgittins / CANT-HYD-HydrocarbonBiodegradationView external linksLinks
Hydrocarbon biodegradation gene annotation
☆19Jul 14, 2022Updated 3 years ago
Alternatives and similar repositories for CANT-HYD-HydrocarbonBiodegradation
Users that are interested in CANT-HYD-HydrocarbonBiodegradation are comparing it to the libraries listed below
Sorting:
- ☆14Sep 2, 2021Updated 4 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Jul 14, 2024Updated last year
- This is a repository for CAMPER.☆16Mar 18, 2024Updated last year
- Protocol for finding informative protein families and then using them to score omic samples☆18Jul 27, 2022Updated 3 years ago
- ☆10Mar 29, 2025Updated 10 months ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated last year
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Feb 5, 2022Updated 4 years ago
- KEGG Module Evaluation Tool☆32Nov 15, 2023Updated 2 years ago
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆24Feb 7, 2025Updated last year
- ☆26Jun 20, 2023Updated 2 years ago
- ☆49Mar 13, 2024Updated last year
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆28Jan 15, 2026Updated last month
- GEne Cluster prediction with COnditional random fields.☆79Jan 24, 2026Updated 3 weeks ago
- Binning Virus Genomes from Metagenomes☆70Jul 13, 2022Updated 3 years ago
- ☆57Updated this week
- Tool for unsupervised contig binning from viral metagenomes☆17Oct 22, 2021Updated 4 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆87Dec 27, 2024Updated last year
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 2 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆34Sep 20, 2022Updated 3 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated 6 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Feb 17, 2023Updated 3 years ago
- Pipeline for major biological analyses.☆36Mar 30, 2022Updated 3 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆24Jun 9, 2021Updated 4 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Mar 22, 2024Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Oct 12, 2023Updated 2 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Oct 10, 2025Updated 4 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated 11 months ago
- MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using machine lEarning Techniques☆12Dec 16, 2025Updated 2 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆180Jan 28, 2026Updated 3 weeks ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22May 14, 2023Updated 2 years ago
- A tutorial for Metagenome-Atlas☆23Nov 24, 2023Updated 2 years ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆66Mar 2, 2022Updated 3 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆74Aug 24, 2023Updated 2 years ago
- R package for computing alpha and beta contributional diversity metrics☆10May 5, 2023Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Jan 23, 2026Updated 3 weeks ago
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 2 months ago