RyanCook94 / inpharedLinks
Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
☆76Updated 9 months ago
Alternatives and similar repositories for inphared
Users that are interested in inphared are comparing it to the libraries listed below
Sorting:
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆72Updated last month
- Find clustered hits from a BLAST search☆131Updated 3 weeks ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Updated 4 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆32Updated 2 years ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆130Updated this week
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆58Updated 8 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆102Updated 2 years ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆99Updated last week
- Viral protein family functional prediction using protein language models☆21Updated last month
- Bioinformatics tool for Locus Visualisation☆158Updated last week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆97Updated 8 months ago
- ☆81Updated 2 months ago
- Exploring the "dusk matter" of the RNA virosphere☆37Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated last week
- Binning Virus Genomes from Metagenomes☆70Updated 3 years ago
- Detection of phage RBPs based on protein domains and machine learning☆30Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- PHANOTATE: a gene caller for phages.☆82Updated last year
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆161Updated last month
- ☆34Updated 4 months ago
- Supporting code for uncultivated gut virus manuscript☆78Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆54Updated last year
- Systematic search of all known anti-phage systems.☆144Updated 2 weeks ago
- Unified Human Gut Virome Catalog☆41Updated 2 months ago
- ☆66Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 4 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated 2 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated 2 weeks ago
- Phage Annotation using Protein Structures☆148Updated this week