RyanCook94 / inphared
Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
☆66Updated last month
Alternatives and similar repositories for inphared:
Users that are interested in inphared are comparing it to the libraries listed below
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆57Updated 2 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆86Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆72Updated 5 months ago
- PHANOTATE: a tool to annotate phage genomes.☆72Updated 2 months ago
- Phage Annotation using Protein Structures☆95Updated this week
- Bioinformatics tool for Locus Visualisation☆85Updated 2 weeks ago
- Find clustered hits from a BLAST search☆111Updated 2 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 6 months ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆82Updated 2 weeks ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated 11 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆130Updated this week
- Follow up to Grace Blackwell's 661k dataset, for 2023☆91Updated this week
- Systematic search of all known anti-phage systems.☆87Updated last week
- Pipeline for major biological analyses.☆34Updated 2 years ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆33Updated 5 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆53Updated 6 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆44Updated 3 weeks ago
- Detection of phage RBPs based on protein domains and machine learning☆22Updated last week
- Local version of the virus identification and analysis web server (tool set)☆42Updated last week
- A workflow and scripts for large-scale antiSMASH analyses☆34Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated last month
- ☆62Updated last month
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆48Updated 2 years ago
- Supporting code for uncultivated gut virus manuscript☆68Updated last year
- viralVerify: viral contig verification tool☆67Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆97Updated 3 weeks ago
- Binning Virus Genomes from Metagenomes☆60Updated 2 years ago
- MGnify genome analysis pipeline☆104Updated last week