RyanCook94 / inpharedLinks
Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
☆67Updated 2 months ago
Alternatives and similar repositories for inphared
Users that are interested in inphared are comparing it to the libraries listed below
Sorting:
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated 6 months ago
- Detection of phage RBPs based on protein domains and machine learning☆23Updated 4 months ago
- Local version of the virus identification and analysis web server (tool set)☆61Updated this week
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- PHANOTATE: a gene caller for phages.☆77Updated 6 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- Systematic search of all known anti-phage systems.☆108Updated last week
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆50Updated 3 weeks ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆83Updated last month
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Phage Annotation using Protein Structures☆110Updated last week
- ☆72Updated last month
- Bioinformatics tool for Locus Visualisation☆106Updated last month
- Follow up to Grace Blackwell's 661k dataset, for 2023☆105Updated last month
- ☆32Updated 4 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 10 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆84Updated last month
- Python tool to reduce size and redundancy of phylogenetic datasets☆42Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆48Updated 2 weeks ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆54Updated 2 months ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆13Updated 7 months ago
- Binning Virus Genomes from Metagenomes☆65Updated 2 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆36Updated last year
- Viral protein family functional prediction using protein language models☆19Updated last year
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆67Updated last week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆21Updated 4 months ago
- ☆30Updated 5 months ago