SegataLab / viromeqc
ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes
☆19Updated 2 years ago
Alternatives and similar repositories for viromeqc:
Users that are interested in viromeqc are comparing it to the libraries listed below
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Prophage Activity Estimator☆26Updated 10 months ago
- ☆13Updated 3 weeks ago
- viralFlye pipeline☆18Updated 8 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- ☆16Updated 4 years ago
- ☆31Updated last year
- MAGScoT - a MAG scoring and refinement tool☆34Updated 6 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated last month
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆29Updated 2 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 4 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆29Updated this week
- Discover and annotate the virome☆40Updated last week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- ☆17Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- Unified Human Gut Virome Catalog☆28Updated 9 months ago
- Calculate assocations between genes and traits☆23Updated last month
- Detect contigs of complete circular genomes☆23Updated 5 years ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 4 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Updated 8 months ago