refresh-bio / vclustLinks
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
☆84Updated last month
Alternatives and similar repositories for vclust
Users that are interested in vclust are comparing it to the libraries listed below
Sorting:
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆48Updated 2 weeks ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆69Updated this week
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated 2 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆83Updated last month
- ☆72Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- Binning Virus Genomes from Metagenomes☆65Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆50Updated 3 weeks ago
- GTDB taxonomy taxdump files with trackable TaxIds☆54Updated last month
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆49Updated 2 years ago
- Bioinformatics tool for Locus Visualisation☆106Updated last month
- Bifrost graph gene caller.☆95Updated 9 months ago
- ☆32Updated 4 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆105Updated last month
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆57Updated last month
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Precise host read removal☆101Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 4 months ago
- Prediction of prophages from bacterial genomes☆78Updated 2 weeks ago
- ☆54Updated last year
- ARG normalization by mapping to the ARO ontology.☆57Updated this week
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated this week
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆44Updated 11 months ago
- Convert GFF, fastas, annotation table and species name into Genbank.☆14Updated last month
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 4 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago