refresh-bio / vclust
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
☆58Updated 4 months ago
Alternatives and similar repositories for vclust:
Users that are interested in vclust are comparing it to the libraries listed below
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated this week
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆29Updated this week
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- Unified Human Gut Virome Catalog☆28Updated 9 months ago
- Comparisons of multiple different prophage predictions☆25Updated 3 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆48Updated 4 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 9 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated this week
- ☆30Updated 2 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆47Updated 3 months ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Bifrost graph gene caller.☆93Updated 7 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- Bacterial GWAS analysis☆40Updated this week
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆61Updated 3 months ago
- Discover and annotate the virome☆40Updated last week
- A toolkit for prokaryotic comparative genomics☆47Updated 3 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated last week
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆45Updated 3 weeks ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆57Updated last week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last month
- Recombination-free trees☆58Updated 3 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 6 months ago
- whole genome MLST analysis☆41Updated 3 weeks ago
- ☆28Updated last year