refresh-bio / vclust
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
☆58Updated 4 months ago
Alternatives and similar repositories for vclust
Users that are interested in vclust are comparing it to the libraries listed below
Sorting:
- Unified Human Gut Virome Catalog☆31Updated 9 months ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- ☆31Updated 2 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆30Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- Bacterial GWAS analysis☆40Updated 3 weeks ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆47Updated 3 months ago
- Bifrost graph gene caller.☆93Updated 7 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 2 weeks ago
- Discover and annotate the virome☆42Updated 3 weeks ago
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated 2 weeks ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated 2 months ago
- Recombination-free trees☆58Updated last month
- A toolkit for prokaryotic comparative genomics☆48Updated 3 months ago
- Gene-flank analysis tool☆27Updated 4 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆48Updated 5 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 7 months ago
- Comparisons of multiple different prophage predictions☆25Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆62Updated 3 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆57Updated 3 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 6 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated last month
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 10 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated 3 weeks ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆43Updated 2 months ago