GreyGuoweiChen / VirBot
VirBot: a protein-based RNA virus detector for metagenomic data
☆29Updated 6 months ago
Alternatives and similar repositories for VirBot:
Users that are interested in VirBot are comparing it to the libraries listed below
- ☆28Updated this week
- ☆20Updated 9 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 7 months ago
- Local version of the virus identification and analysis web server (tool set)☆42Updated last week
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 2 years ago
- ☆50Updated 11 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆70Updated last month
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Binning Virus Genomes from Metagenomes☆60Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 3 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆73Updated 5 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆44Updated 3 weeks ago
- ☆26Updated 10 months ago
- Unified Human Gut Virome Catalog☆27Updated 7 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆53Updated this week
- ☆31Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 4 months ago
- Convert GFF, fastas, annotation table and species name into Genbank.☆14Updated 10 months ago
- Taxonomic classification of viruses at Order and Family level☆20Updated last year
- Discover and annotate the virome☆36Updated 4 months ago
- ☆26Updated last week
- ☆62Updated last month
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆14Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆44Updated 2 weeks ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 10 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 9 months ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 5 months ago