GreyGuoweiChen / VirBotLinks
VirBot: a protein-based RNA virus detector for metagenomic data
☆33Updated last year
Alternatives and similar repositories for VirBot
Users that are interested in VirBot are comparing it to the libraries listed below
Sorting:
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 6 months ago
- ☆57Updated last year
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- ☆31Updated 6 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆89Updated 3 months ago
- ☆33Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆75Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- ☆60Updated last year
- Unified Human Gut Virome Catalog☆36Updated last week
- Binning Virus Genomes from Metagenomes☆65Updated 3 years ago
- Discover and annotate the virome☆49Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 7 months ago
- Virus Protein Family tools☆30Updated 3 years ago
- ☆75Updated this week
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆77Updated 8 months ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆48Updated last year
- Python tool to reduce size and redundancy of phylogenetic datasets☆45Updated 2 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆26Updated 4 months ago
- Predict prokaryotic host for phage metagenomic sequences☆51Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆28Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 4 months ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆36Updated 6 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆60Updated 5 months ago