VirBot: a protein-based RNA virus detector for metagenomic data
☆34Jul 29, 2024Updated last year
Alternatives and similar repositories for VirBot
Users that are interested in VirBot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆25Jan 8, 2026Updated 5 months ago
- Virus Identification☆26May 26, 2025Updated last year
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- Multi-Teacher Distillation for Protein embedding☆12May 31, 2024Updated 2 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36May 25, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated 10 months ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 2 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆90Dec 27, 2024Updated last year
- Model for taxonomy classification☆16May 28, 2021Updated 5 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆38Apr 9, 2026Updated 2 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Oct 3, 2025Updated 8 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆24May 13, 2024Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆152Updated this week
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- Exploring the "dusk matter" of the RNA virosphere☆39Mar 25, 2022Updated 4 years ago
- viralVerify: viral contig verification tool☆75Feb 19, 2026Updated 3 months ago
- Host prediction for phages☆27Nov 6, 2024Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆53Jun 2, 2026Updated last week
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- A community effort to create a shared resource for HMM-based RdRp discovery☆15Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CNN based classifier for detecting viral sequences among metagenomic contigs☆34Aug 24, 2020Updated 5 years ago
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆23Aug 15, 2025Updated 9 months ago
- An open database of vertebrate-virus interactions☆42Jun 3, 2026Updated last week
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- The viral taxonomic assignment pipeline☆44Apr 16, 2026Updated last month
- Discover and annotate the virome☆63Feb 11, 2026Updated 4 months ago
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 2 years ago
- Set of tools for viral metagenomics.☆17Jun 1, 2026Updated last week
- Scalable relaxed clock phylogenetic dating☆27Sep 3, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆27May 17, 2026Updated 3 weeks ago
- ☆15May 22, 2025Updated last year
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated 11 months ago
- A solutions manual for all excercises in the Ziheng Yang's two seminall books on statistical molecular evolution: Computational Molecular…☆26May 20, 2026Updated 3 weeks ago
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated 2 months ago
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 3 years ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆19Nov 6, 2024Updated last year