mgabriell1 / EUKsembleLinks
Pipeline for identification of eukaryotic contigs in metagenomic assemblies
☆13Updated last year
Alternatives and similar repositories for EUKsemble
Users that are interested in EUKsemble are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 years ago
- ☆14Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- Population genomics from metagenomes☆12Updated last year
- Prophage Activity Estimator☆28Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- ☆20Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- ☆16Updated 5 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- ☆54Updated 4 months ago
- Hydrocarbon biodegradation gene annotation☆18Updated 3 years ago
- ☆20Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated 2 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- ☆24Updated 6 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆21Updated 10 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated 3 weeks ago
- ☆33Updated last year
- KEGG Module Evaluation Tool☆32Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- ☆21Updated 3 years ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year