viralInformatics / VIGALinks
☆13Updated last month
Alternatives and similar repositories for VIGA
Users that are interested in VIGA are comparing it to the libraries listed below
Sorting:
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 2 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated last month
- Computation of average nucleotide identity with the use of MMseqs2☆13Updated 7 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 2 months ago
- ☆10Updated last month
- A Swiss-Army-Knife for Bioinformaticians☆12Updated 2 weeks ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆26Updated 2 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated last year
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆12Updated 8 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆16Updated 9 months ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆12Updated last year
- Microbial agile accurate SNP Typer☆30Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆18Updated 3 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆30Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆46Updated 2 months ago
- Methods to determine sequence element (unitig) presence/absence☆20Updated 7 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 8 months ago
- Variant call verification☆16Updated 2 months ago
- Manipulate and generate figures for trees in Newick format☆22Updated 2 weeks ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆27Updated this week
- ☆14Updated 4 years ago
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆21Updated 5 months ago
- Genome size estimation from long read overlaps☆57Updated 2 months ago