☆15May 22, 2025Updated 10 months ago
Alternatives and similar repositories for VIGA
Users that are interested in VIGA are comparing it to the libraries listed below
Sorting:
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆10Oct 3, 2025Updated 5 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Oct 4, 2024Updated last year
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆35Sep 20, 2022Updated 3 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Jan 8, 2026Updated 2 months ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- Discover and annotate the virome☆59Feb 11, 2026Updated last month
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆48Feb 5, 2026Updated last month
- 一个中文基因数据库 面向专业人员也面向普通大众☆15Sep 20, 2018Updated 7 years ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆17Mar 18, 2025Updated last year
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 3 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆71Nov 6, 2025Updated 4 months ago
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆39May 30, 2025Updated 9 months ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated 8 months ago
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- Set of tools for viral metagenomics.☆14Jan 21, 2026Updated 2 months ago
- Notebooks to illustrate how BigFISH is working.☆12Sep 5, 2022Updated 3 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Feb 11, 2020Updated 6 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆17Feb 3, 2026Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Apr 23, 2025Updated 10 months ago
- Python3 command-line and GUI tools for common codon usage statistics given a FASTA of Coding sequences☆13Dec 9, 2025Updated 3 months ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Nov 20, 2023Updated 2 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated last year
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆33Nov 20, 2025Updated 4 months ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- ☆34Oct 6, 2025Updated 5 months ago
- Reconstruction and analysis of viral and host genomes at multi-organ level