☆15May 22, 2025Updated last year
Alternatives and similar repositories for VIGA
Users that are interested in VIGA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Oct 3, 2025Updated 7 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20May 11, 2026Updated last week
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36Updated this week
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆25Jan 8, 2026Updated 4 months ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- Discover and annotate the virome☆63Feb 11, 2026Updated 3 months ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆51May 5, 2026Updated 2 weeks ago
- 一个中文基因数据库 面向专业人员也面向普通大众☆15Sep 20, 2018Updated 7 years ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆17Mar 18, 2025Updated last year
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 3 years ago
- Reference-guided multiple sequence alignment of viral genomes☆72May 10, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆39May 30, 2025Updated 11 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆38Apr 9, 2026Updated last month
- A repo with just adapter sequences☆15Jul 7, 2025Updated 10 months ago
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- Notebooks to illustrate how BigFISH is working.☆12Sep 5, 2022Updated 3 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Feb 11, 2020Updated 6 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆18May 13, 2026Updated last week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆37Apr 23, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Python3 command-line and GUI tools for common codon usage statistics given a FASTA of Coding sequences☆13Dec 9, 2025Updated 5 months ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Nov 20, 2023Updated 2 years ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆33Apr 30, 2026Updated 3 weeks ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated 2 years ago
- Set of tools for viral metagenomics.☆16Jan 21, 2026Updated 4 months ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- ☆34Oct 6, 2025Updated 7 months ago
- Reconstruction and analysis of viral and host genomes at multi-organ level☆21Apr 10, 2026Updated last month
- ViOTUcluster: A high-speed, all-in-one solution that streamlines the entire virome analysis workflow☆22Jan 13, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A richly featured desktop platform for data analysis of bioinformatics. Especially, for quick sequence annotation and mutation analysis o…☆34Nov 6, 2024Updated last year
- An open database of vertebrate-virus interactions☆41Apr 28, 2026Updated 3 weeks ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆52Updated this week
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Virus Identification☆26May 26, 2025Updated 11 months ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 2 years ago