Alternatives and similar repositories for ViraLM

Users that are interested in ViraLM are comparing it to the libraries listed below

• HIT-ImmunologyLab / DBSCAN-SWA
  ☆32Updated last year
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆34Updated 3 years ago
• edzuf / CrisprOpenDB
  ☆18Updated 4 years ago
• Orin-beep / HOTSPOT
  HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.
  ☆10Updated last year
• lazzarigioele / graphanalyzer
  This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…
  ☆18Updated last year
• DrKaiyangZheng / VITAP
  The viral taxonomic assignment pipeline
  ☆23Updated 2 months ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆31Updated 9 months ago
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆30Updated 9 months ago
• apcamargo / ictv-mmseqs2-protein-database
  ☆32Updated 2 months ago
• michaelkyu / MobMess
  ☆20Updated 3 years ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 11 months ago
• CristinaMoraru / VIRIDIC
  VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.
  ☆14Updated last year
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆49Updated 10 months ago
• HubertTang / PLASMe
  ☆27Updated last year
• WangLab-SCSIO / Prophage_Tracer
  Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment
  ☆24Updated 7 months ago
• zoubohao / Deepurify
  Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.
  ☆19Updated this week
• danielchang2002 / TaxiBGC_2022
  Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…
  ☆15Updated last year
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆30Updated 2 weeks ago
• KIT-IBG-5 / mdmcleaner
  MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
  ☆24Updated 2 years ago
• chg60 / DEPhT
  Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
  ☆20Updated 5 months ago
• AlexanderLabWHOI / EukHeist
  ☆25Updated last year
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆40Updated last month
• deprekate / PHACTS
  A simple program to classify the lifestyle of phages.
  ☆17Updated last year
• EBI-Metagenomics / genome_uploader
  Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
  ☆24Updated last month
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆40Updated 7 months ago
• amillard / tax_myPHAGE
  Workflow to assign Taxonomy to a bacteriophage genome isolate
  ☆28Updated last month
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
  ☆45Updated 3 weeks ago
• RabbitBio / RabbitTClust
  RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches
  ☆45Updated 3 weeks ago
• feargalr / Demovir
  Taxonomic classification of viruses at Order and Family level
  ☆20Updated 2 years ago
• yosuken / ViPTreeGen
  a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree
  ☆30Updated 2 years ago