Alternatives and similar repositories for ViraLM:

Users that are interested in ViraLM are comparing it to the libraries listed below

• HIT-ImmunologyLab / DBSCAN-SWA
  ☆31Updated last year
• Orin-beep / HOTSPOT
  HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.
  ☆10Updated 11 months ago
• DrKaiyangZheng / VITAP
  The viral taxonomic assignment pipeline
  ☆16Updated 3 weeks ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆33Updated 3 years ago
• apcamargo / ictv-mmseqs2-protein-database
  ☆29Updated last month
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆27Updated 8 months ago
• michaelkyu / MobMess
  ☆19Updated 3 years ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆48Updated 8 months ago
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆26Updated 2 weeks ago
• zoubohao / Deepurify
  Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.
  ☆16Updated 2 months ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 10 months ago
• lazzarigioele / graphanalyzer
  This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…
  ☆18Updated last year
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆30Updated 8 months ago
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆31Updated 2 years ago
• dyxstat / ViralCC
  ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes
  ☆16Updated last year
• KennthShang / PhaTYP
  PhaTYP: Predicting lifestyle for bacteriophages using BERT
  ☆13Updated 4 months ago
• chg60 / DEPhT
  Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
  ☆20Updated 3 months ago
• crazyinter / RNN-VirSeeker
  This is a deep learning method for identification of viral contigs with short length from metagenomic data.
  ☆10Updated 3 years ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆38Updated 5 months ago
• metagentools / MetaCoAG
  🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
  ☆62Updated 6 months ago
• KennthShang / PhaGCN2.0
  ☆34Updated 2 weeks ago
• KIT-IBG-5 / mdmcleaner
  MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
  ☆24Updated 2 years ago
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆39Updated 3 months ago
• metagentools / metagenomic_binning_review
  Code used to analyse and plot metadata of metagenomic binning tools
  ☆13Updated 7 months ago
• deprekate / PHACTS
  A simple program to classify the lifestyle of phages.
  ☆17Updated last year
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
  ☆44Updated 3 weeks ago
• feargalr / Demovir
  Taxonomic classification of viruses at Order and Family level
  ☆20Updated 2 years ago
• NeLLi-team / gvclass
  ☆13Updated 2 months ago
• HubertTang / PLASMe
  ☆26Updated 11 months ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆29Updated last year