metaGmetapop / metapop
A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
☆38Updated last year
Related projects ⓘ
Alternatives and complementary repositories for metapop
- ☆45Updated 7 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 8 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆19Updated last year
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- ☆48Updated 8 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆22Updated 3 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Binning Virus Genomes from Metagenomes☆58Updated 2 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆27Updated 10 months ago
- Prophage Activity Estimator☆26Updated 5 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆36Updated last month
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆45Updated 2 years ago
- ☆30Updated 11 months ago
- Discover and annotate the virome☆31Updated last month
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆18Updated 9 months ago
- ☆36Updated 11 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last week
- ☆17Updated 2 months ago
- Metagenomics-related extended functionalities to samtools☆19Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 7 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆18Updated last year
- Extract metadata from biosamples in NCBI☆11Updated 3 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- IslandPath standalone software☆31Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆52Updated 2 months ago