A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
☆44Apr 4, 2023Updated 3 years ago
Alternatives and similar repositories for metapop
Users that are interested in metapop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆77Aug 13, 2026Updated 2 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- A tool to assemble high-quality phages from metagenomes.☆28Sep 10, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bioinformatics program inStrain☆192Oct 9, 2026Updated last week
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆233Mar 24, 2026Updated 6 months ago
- Virus Identification By iteRative ANnoTation☆205Apr 15, 2024Updated 2 years ago
- Pipeline for metabolic annotation of microbial genomes☆154Mar 20, 2025Updated last year
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes☆21Dec 26, 2025Updated 9 months ago
- The viral taxonomic assignment pipeline☆47Aug 31, 2026Updated last month
- customizable pipeline to identify viral sequences from (meta)genomic data☆299Nov 28, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 4 months ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Updated this week
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆78Updated this week
- ☆19Updated this week
- 🤝 Tool for mining KEGG pathways completeness data from eggNOG-mapper annotations☆43Aug 30, 2026Updated last month
- geNomad: Identification of mobile genetic elements☆337Updated this week
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆41Sep 20, 2026Updated 3 weeks ago
- ☆16Jun 18, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 7 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆14Mar 14, 2024Updated 2 years ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 2 years ago
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- Prophage Activity Estimator☆35May 30, 2024Updated 2 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆90Oct 27, 2023Updated 2 years ago
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆236Updated this week
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆26Updated this week
- This is a repository for CAMPER.☆18Mar 18, 2024Updated 2 years ago
- Toolbox for comparative genomics of MAGs☆93Jul 30, 2026Updated 2 months ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 5 years ago