A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
☆44Apr 4, 2023Updated 3 years ago
Alternatives and similar repositories for metapop
Users that are interested in metapop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Binning Virus Genomes from Metagenomes☆74Jul 13, 2022Updated 3 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆72Dec 1, 2025Updated 5 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆89Dec 27, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆225Mar 24, 2026Updated last month
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- Bioinformatics program inStrain☆185Mar 12, 2026Updated last month
- Virus Identification By iteRative ANnoTation☆194Apr 15, 2024Updated 2 years ago
- The viral taxonomic assignment pipeline☆43Apr 16, 2026Updated 3 weeks ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆289Nov 28, 2024Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆332Apr 30, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆38Apr 9, 2026Updated last month
- ☆16Jun 18, 2020Updated 5 years ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Apr 29, 2026Updated last week
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 2 months ago
- Prophage Activity Estimator☆33May 30, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- geNomad: Identification of mobile genetic elements☆307Mar 29, 2026Updated last month
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Oct 27, 2023Updated 2 years ago
- Improvement of metagenome-assembled genomes☆58Mar 17, 2020Updated 6 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆229Apr 1, 2026Updated last month
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36Sep 20, 2022Updated 3 years ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- Extract metadata from biosamples in NCBI☆17Mar 12, 2026Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Discover and annotate the virome☆63Feb 11, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆25Nov 2, 2025Updated 6 months ago
- ☆58Mar 14, 2024Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆257Mar 20, 2025Updated last year
- ☆11Feb 9, 2024Updated 2 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago
- Phage-Host Interaction Search Tool☆30Jul 8, 2024Updated last year
- ☆42Feb 14, 2021Updated 5 years ago