metaGmetapop / metapop
A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
☆40Updated last year
Alternatives and similar repositories for metapop:
Users that are interested in metapop are comparing it to the libraries listed below
- Improvement of metagenome-assembled genomes☆50Updated 5 years ago
- Discover and annotate the virome☆39Updated 5 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆20Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 8 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- ☆50Updated 11 months ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Updated last year
- Extract metadata from biosamples in NCBI☆13Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated last month
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- ☆24Updated 6 years ago
- ☆26Updated 11 months ago
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- Prophage Activity Estimator☆26Updated 9 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆20Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆23Updated 2 weeks ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 11 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆20Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated last month
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 11 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 5 months ago
- ☆37Updated last year
- ☆20Updated 6 months ago