This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED database.
☆19Nov 29, 2023Updated 2 years ago
Alternatives and similar repositories for graphanalyzer
Users that are interested in graphanalyzer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆38Dec 6, 2023Updated 2 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆82Apr 16, 2025Updated last year
- ☆17May 26, 2022Updated 3 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆43May 5, 2026Updated 2 weeks ago
- ☆19May 13, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆85Dec 4, 2025Updated 5 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆36Jan 22, 2026Updated 4 months ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- viralVerify: viral contig verification tool☆75Feb 19, 2026Updated 3 months ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- multiPhATE with comparative genomics☆18Jun 14, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- Identifying viruses from metagenomic data by deep learning☆155May 5, 2026Updated 2 weeks ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆52Oct 12, 2023Updated 2 years ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- WtP: Phage identification via nextflow and docker or singularity☆105Mar 19, 2026Updated 2 months ago
- ☆35Jun 26, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Prophage Activity Estimator☆33May 30, 2024Updated last year
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Nov 20, 2023Updated 2 years ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated last year
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 4 months ago
- ☆34Dec 20, 2023Updated 2 years ago
- ☆33Jul 14, 2021Updated 4 years ago
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 2 years ago
- Virus Identification☆26May 26, 2025Updated 11 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆27Updated this week
- ☆21Sep 26, 2025Updated 7 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- ☆11Sep 16, 2020Updated 5 years ago
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 3 months ago
- Virus Identification By iteRative ANnoTation☆195Apr 15, 2024Updated 2 years ago