lazzarigioele / graphanalyzer
This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED database.
☆18Updated last year
Alternatives and similar repositories for graphanalyzer:
Users that are interested in graphanalyzer are comparing it to the libraries listed below
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆18Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 3 months ago
- ☆31Updated last year
- viralFlye pipeline☆18Updated 7 months ago
- Prophage Activity Estimator☆26Updated 10 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆26Updated 2 weeks ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆23Updated 5 months ago
- MAGScoT - a MAG scoring and refinement tool☆32Updated 5 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 3 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 9 months ago
- ☆25Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated 11 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆13Updated 3 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Phage-Host Interaction Search Tool☆27Updated 8 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- Unified Human Gut Virome Catalog☆28Updated 8 months ago
- Population genomics from metagenomes☆11Updated 7 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆20Updated 6 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- ☆13Updated this week
- Calculate assocations between genes and traits☆23Updated 3 weeks ago
- ☆19Updated 3 years ago