wwood / OrfMLinks
simple and not slow ORF caller
☆21Updated last month
Alternatives and similar repositories for OrfM
Users that are interested in OrfM are comparing it to the libraries listed below
Sorting:
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 11 months ago
- ☆23Updated 6 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- De novo VIral Genome Annotator☆23Updated last year
- Find Unique genomic Regions☆32Updated last month
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Bacterial Operon Finder for Functional Organization☆15Updated 2 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 4 months ago
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
- Read contamination removal☆25Updated last year
- ☆18Updated 8 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆20Updated 9 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Raspir, the rare species identifier☆11Updated 2 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Updated 5 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year