simple and not slow ORF caller
☆23Apr 7, 2026Updated this week
Alternatives and similar repositories for OrfM
Users that are interested in OrfM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Mar 15, 2023Updated 3 years ago
- Automatically exported from code.google.com/p/qsimscan☆14Oct 10, 2021Updated 4 years ago
- GraftM - Rapid community profiles from metagenomes☆50Nov 6, 2025Updated 5 months ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆15Nov 21, 2025Updated 4 months ago
- A Swiss-Army-Knife for Bioinformaticians☆15Mar 20, 2026Updated 3 weeks ago
- ☆12Apr 21, 2016Updated 9 years ago
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Oct 3, 2020Updated 5 years ago
- C program for selecting DNA substitution models using PAUP*☆18Mar 24, 2020Updated 6 years ago
- Reduced Alphabet based Protein similarity Search☆40Nov 30, 2020Updated 5 years ago
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- The CRISPR assembler☆34May 13, 2021Updated 4 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Quickly calculate and visualize sequence coverage in alignment files☆100Jun 22, 2019Updated 6 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Dec 23, 2024Updated last year
- ☆16Aug 8, 2025Updated 8 months ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- Assign taxonomic ranks based on evolutionary divergence.☆23Mar 3, 2026Updated last month
- Go implementation of ntHash☆20Sep 16, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Apr 29, 2022Updated 3 years ago
- LAMBDA – the Local Aligner for Massive Biological DatA☆83Aug 26, 2024Updated last year
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Nov 3, 2017Updated 8 years ago
- k-mer Counter based on Multiple Burst Trees (multi-threaded)☆13Aug 31, 2016Updated 9 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36Sep 20, 2022Updated 3 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆16Nov 7, 2019Updated 6 years ago
- highthroughput rRNA sequence classification and OTU mapping for metagenomic samples☆26Nov 3, 2023Updated 2 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Apr 21, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 4 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 7 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆46Feb 23, 2021Updated 5 years ago
- ☆13Sep 4, 2017Updated 8 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Apr 4, 2022Updated 4 years ago
- A genomic minhashing implementation in Rust☆103Jun 17, 2025Updated 9 months ago