wwood / OrfMLinks
simple and not slow ORF caller
☆21Updated 2 months ago
Alternatives and similar repositories for OrfM
Users that are interested in OrfM are comparing it to the libraries listed below
Sorting:
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- GC Skew Test for Bacterial Genomes☆32Updated 3 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Updated 3 years ago
- Locus and lineage tests for bacterial GWAS☆28Updated 8 years ago
- ☆23Updated 6 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 7 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Find Unique genomic Regions☆32Updated 2 weeks ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Read contamination removal☆25Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- ☆18Updated 8 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- Python bindings for the TaxonKit library☆43Updated 2 weeks ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Updated 6 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Bacterial Operon Finder for Functional Organization☆15Updated 2 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year