RasmussenLab / phambLinks
Downstream processing of VAMB binning for Viral Elucidation
☆50Updated last year
Alternatives and similar repositories for phamb
Users that are interested in phamb are comparing it to the libraries listed below
Sorting:
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆38Updated 3 years ago
- ☆33Updated last year
- Prophage Activity Estimator☆27Updated last year
- ☆26Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- KEGG Module Evaluation Tool☆31Updated last year
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆23Updated 2 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆21Updated 9 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Unified Human Gut Virome Catalog☆36Updated 3 weeks ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- ☆21Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 4 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated 2 weeks ago
- ☆20Updated 2 years ago
- ☆20Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated last week
- Phage-Host Interaction Search Tool☆27Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- ☆31Updated 7 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆39Updated 3 weeks ago
- ☆53Updated 3 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 6 months ago
- Binning Virus Genomes from Metagenomes☆65Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 5 months ago