Downstream processing of VAMB binning for Viral Elucidation
☆54Jul 3, 2024Updated last year
Alternatives and similar repositories for phamb
Users that are interested in phamb are comparing it to the libraries listed below
Sorting:
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- Variational autoencoder for metagenomic binning☆319Feb 23, 2026Updated 3 weeks ago
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Mar 25, 2025Updated 11 months ago
- Virus Identification By iteRative ANnoTation☆190Apr 15, 2024Updated last year
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated last month
- Tool for unsupervised contig binning from viral metagenomes☆17Oct 22, 2021Updated 4 years ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 3 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- ☆38Dec 6, 2023Updated 2 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆44May 8, 2024Updated last year
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆178Mar 8, 2026Updated last week
- WtP: Phage identification via nextflow and docker or singularity☆104Mar 13, 2026Updated last week
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- customizable pipeline to identify viral sequences from (meta)genomic data☆283Nov 28, 2024Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Oct 12, 2023Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 3 months ago
- Systematic search of all known anti-phage systems.☆146Jan 22, 2026Updated last month
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- fast phage annotation program☆199Feb 1, 2026Updated last month
- A simple program to classify the lifestyle of phages.☆16May 22, 2023Updated 2 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆41Feb 26, 2026Updated 3 weeks ago
- Prophage Activity Estimator☆32May 30, 2024Updated last year
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- Unified Human Gut Virome Catalog☆41Nov 10, 2025Updated 4 months ago
- geNomad: Identification of mobile genetic elements☆295Nov 10, 2025Updated 4 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆147Mar 4, 2026Updated 2 weeks ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆38Dec 20, 2024Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆80Apr 16, 2025Updated 11 months ago
- ☆23Feb 7, 2022Updated 4 years ago
- ☆25Jun 20, 2023Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 6 months ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Oct 16, 2024Updated last year