RasmussenLab / phambLinks
Downstream processing of VAMB binning for Viral Elucidation
☆54Updated last year
Alternatives and similar repositories for phamb
Users that are interested in phamb are comparing it to the libraries listed below
Sorting:
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- Prophage Activity Estimator☆31Updated last year
- ☆26Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated this week
- ☆34Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated 3 weeks ago
- ☆21Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 9 months ago
- ☆20Updated last year
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- Hydrocarbon biodegradation gene annotation☆19Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆40Updated 2 years ago
- ☆22Updated 4 years ago
- ☆25Updated last year
- ☆14Updated 2 years ago
- Population genomics from metagenomes☆12Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- Unified Human Gut Virome Catalog☆41Updated 2 months ago
- Binning Virus Genomes from Metagenomes☆70Updated 3 years ago