yosuken / ccfindLinks
ccfind - circular complete genome finder with clues of terminal redundancy
☆16Updated 5 years ago
Alternatives and similar repositories for ccfind
Users that are interested in ccfind are comparing it to the libraries listed below
Sorting:
- Finding regions of similarity between plasmids☆16Updated 3 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- Organism-specific interpretation of AMR genotypes☆14Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 3 weeks ago
- Neptune: Genomic Signature Discovery☆20Updated last year
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Updated 10 months ago
- A Hierarchical Approach to Pangenomics Inference☆13Updated last year
- Parallel/Homoplasic SNP Finder☆21Updated 2 years ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- ☆13Updated 8 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 4 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 7 months ago
- A script for comparing old vs new versions of genome annotations☆22Updated 2 years ago
- Dadaist2 🟨 Highway to R☆13Updated 9 months ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆30Updated last week
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year