yosuken / ccfindLinks
ccfind - circular complete genome finder with clues of terminal redundancy
☆16Updated 5 years ago
Alternatives and similar repositories for ccfind
Users that are interested in ccfind are comparing it to the libraries listed below
Sorting:
- Finding regions of similarity between plasmids☆16Updated 3 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Updated 4 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A Hierarchical Approach to Pangenomics Inference☆13Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 10 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 5 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆16Updated last month
- Dadaist2 🟨 Highway to R☆13Updated 10 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Parallel/Homoplasic SNP Finder☆21Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Organism-specific interpretation of AMR genotypes