yosuken / ccfindLinks
ccfind - circular complete genome finder with clues of terminal redundancy
☆15Updated 5 years ago
Alternatives and similar repositories for ccfind
Users that are interested in ccfind are comparing it to the libraries listed below
Sorting:
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated 2 weeks ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated last week
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 11 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Microbial agile accurate SNP Typer☆30Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 10 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- A taxonomic classifier of plasmids☆27Updated 4 years ago
- ☆13Updated 7 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆15Updated 8 months ago
- Parallel/Homoplasic SNP Finder☆21Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- ☆24Updated 6 months ago
- software to identify primers that can distinguish genomes☆21Updated 6 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 4 months ago
- Systematic resistome analysis☆10Updated 5 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 5 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 3 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 5 months ago
- Prediction of microbial interactions in complex communities☆12Updated 11 months ago