molbiodiv / bcgTreeLinks
Automatically calculate phylogenetic trees from bacterial core genes
☆20Updated last month
Alternatives and similar repositories for bcgTree
Users that are interested in bcgTree are comparing it to the libraries listed below
Sorting:
- ☆18Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Whole genome core alignments from multiple draft genomes☆13Updated 8 years ago
- Automatic eukaryotic taxonomic classification☆29Updated last month
- ☆36Updated 3 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆18Updated 11 months ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated 3 weeks ago
- ☆45Updated 2 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Prophage Activity Estimator☆26Updated last year
- ☆52Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Estimate metagenomic coverage and sequence diversity☆54Updated 10 months ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 7 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Calculate assocations between genes and traits☆23Updated 3 months ago