gavinmdouglas / POMSLinks
Phylogenetic Organization of Metagenomic Signals (POMS)
☆19Updated 2 years ago
Alternatives and similar repositories for POMS
Users that are interested in POMS are comparing it to the libraries listed below
Sorting:
- Plot microbiome time series in parallel☆26Updated last year
- R package for microbial pangenomics☆24Updated 3 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- ☆16Updated 2 years ago
- ☆56Updated last week
- Functions to manipulate and visualize microbial community data☆12Updated last year
- Speedy versions of phyloseq functions☆48Updated last year
- scripts for microbiome analysis☆11Updated last year
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆20Updated 9 months ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 9 months ago
- ☆10Updated 4 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Dadaist2 🟨 Highway to R☆13Updated 5 months ago
- ☆26Updated 2 years ago
- ☆13Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 10 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- ☆25Updated 6 months ago
- Tools for analyzing trees☆14Updated 3 months ago
- ☆13Updated 7 years ago
- Working with the outputs of sourmash in R☆28Updated last year
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated 3 weeks ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆16Updated last year
- A simple script to display stuff on a world map with R and ggplot☆17Updated last year
- ☆39Updated last year