Alternatives and similar repositories for POMS

Users that are interested in POMS are comparing it to the libraries listed below

• larssnip / micropan
  R package for microbial pangenomics
  ☆24Updated 3 years ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆27Updated 2 years ago
• elizabethmcd / metabolisHMM
  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
  ☆17Updated 3 years ago
• EBI-Metagenomics / kegg-pathways-completeness-tool
  ☆28Updated 9 months ago
• metagenopolis / CroCoDeEL
  CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
  ☆24Updated 3 months ago
• Xiaoyu2425 / mEQO
  ☆17Updated 2 years ago
• statdivlab / radEmu
  ☆57Updated last week
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆21Updated 3 months ago
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated last year
• Russel88 / MAGinator
  MAGinator - Accurate SNV calling and profiling of MAGs
  ☆24Updated 5 months ago
• donaldtmcknight / microDecon
  An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing
  ☆18Updated 2 years ago
• arumugamlab / MIntO
  Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data
  ☆16Updated last week
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆72Updated 2 months ago
• WatsonLab / KOunt
  Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
  ☆25Updated last year
• lmlui / Jorg
  MAG Circularization Method
  ☆32Updated 2 weeks ago
• wbazant / CORRAL
  ☆14Updated 2 years ago
• Arcadia-Science / sourmashconsumr
  Working with the outputs of sourmash in R
  ☆27Updated 2 years ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆50Updated 3 years ago
• gnanibioinfo / EzMAP
  ☆11Updated 4 years ago
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆29Updated 8 months ago
• AlexanderLabWHOI / EukHeist
  ☆26Updated 2 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆48Updated last year
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆16Updated last year
• GraceYoon / SPRING
  Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data
  ☆24Updated 3 years ago
• statdivlab / groves
  Tools for analyzing trees
  ☆13Updated 7 months ago
• aweimann / traitar
  ☆22Updated 2 years ago
• KoslickiLab / fmh-funprofiler
  A functional profiler for metagenomes using FracMinHash
  ☆20Updated 4 months ago
• gtonkinhill / fastbaps
  A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data
  ☆68Updated 3 years ago
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆31Updated 5 years ago
• alexmsalmeida / metamap
  Snakemake workflow to map and quantify microbial genomes in metagenomic reads
  ☆12Updated last month