gavinmdouglas / POMSLinks
Phylogenetic Organization of Metagenomic Signals (POMS)
☆18Updated 3 years ago
Alternatives and similar repositories for POMS
Users that are interested in POMS are comparing it to the libraries listed below
Sorting:
- R package for microbial pangenomics☆24Updated 3 years ago
- ☆18Updated 2 years ago
- Plot microbiome time series in parallel☆27Updated 2 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Updated 3 years ago
- Functions to manipulate and visualize microbial community data☆12Updated 2 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 4 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- MAGinator - Accurate SNV calling and profiling of MAGs☆24Updated 7 months ago
- ☆61Updated 2 weeks ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Updated 2 months ago
- ☆26Updated 2 years ago
- ☆28Updated last week
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆22Updated 4 months ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆20Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- ☆14Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆72Updated 4 months ago
- ☆13Updated 8 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- ☆22Updated 2 years ago
- MAG Circularization Method☆32Updated last month
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- Tools for analyzing trees☆13Updated 8 months ago
- ☆11Updated 4 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆17Updated 3 weeks ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆25Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 6 months ago
- Working with the outputs of sourmash in R☆28Updated 2 years ago
- scripts for microbiome analysis☆11Updated last year
- Extract metadata from biosamples in NCBI☆16Updated 4 years ago