gavinmdouglas / POMSLinks
Phylogenetic Organization of Metagenomic Signals (POMS)
☆19Updated 2 years ago
Alternatives and similar repositories for POMS
Users that are interested in POMS are comparing it to the libraries listed below
Sorting:
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated last year
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 9 months ago
- ☆23Updated 5 months ago
- R package for microbial pangenomics☆24Updated 3 years ago
- Plot microbiome time series in parallel☆26Updated last year
- Functions to manipulate and visualize microbial community data☆12Updated last year
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆14Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 4 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated last year
- Tools for analyzing trees☆14Updated 3 months ago
- ☆56Updated this week
- MAG Circularization Method☆33Updated 3 years ago
- ☆22Updated 2 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- Metagenomic Estimation of Dietary Intake and Content.☆30Updated 3 months ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Updated 7 months ago
- ☆16Updated 2 years ago
- A functional profiler for metagenomes using FracMinHash☆16Updated 5 months ago
- Factorize metagenotypes to infer strains and their abundances☆12Updated 9 months ago
- Working with the outputs of sourmash in R☆27Updated last year
- Speedy versions of phyloseq functions☆48Updated last year
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆19Updated 8 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- scripts for microbiome analysis☆11Updated 11 months ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆12Updated 6 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Dadaist2 🟨 Highway to R☆13Updated 4 months ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated last year