Alternatives and similar repositories for pytaxonkit:

Users that are interested in pytaxonkit are comparing it to the libraries listed below

• Benson-Genomics-Lab / IRF
  Inverted Repeats Finder: a program to analyze DNA and RNA sequences
  ☆16Updated last month
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆23Updated last year
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated 2 months ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆21Updated 3 years ago
• EBI-Metagenomics / emg-toolkit
  MGnify API toolkit
  ☆21Updated last month
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆28Updated 2 months ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆44Updated last month
• althonos / pyrodigal-gv
  A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
  ☆16Updated 7 months ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆33Updated 3 years ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆16Updated last year
• SushiLab / mVIRs
  ☆13Updated last year
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆22Updated last week
• peng-ye / MetaPGN
  A pipeline for construction and graphical visualization of annotated pangenome networks.
  ☆17Updated 6 years ago
• rrwick / Small-plasmid-Nanopore
  ☆11Updated 3 years ago
• compgenomicslab / TreeProfiler
  tree visualization for tree + annotation data
  ☆31Updated last week
• ku-cbd / PhageBoost
  Rapid discovery of novel prophages using biological feature engineering and machine learning
  ☆37Updated 3 months ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated last year
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated 2 years ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆13Updated 3 years ago
• althonos / pymuscle5
  Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
  ☆20Updated 10 months ago
• nanoporetech / DTR-phage-pipeline
  ☆16Updated last year
• Ecogenomics / gtdb-species-clusters
  Toolkit for establishing, updating, and validating GTDB species clusters
  ☆20Updated 4 months ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆25Updated 2 weeks ago
• wwood / OrfM
  simple and not slow ORF caller
  ☆21Updated 6 years ago
• shenwei356 / ictv-taxdump
  NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)
  ☆20Updated 8 months ago
• NBISweden / nbis-meta
  A snakemake workflow for metagenomic projects
  ☆14Updated 2 years ago
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆36Updated last month