bioforensics / pytaxonkit
Python bindings for the TaxonKit library
☆38Updated 3 weeks ago
Alternatives and similar repositories for pytaxonkit:
Users that are interested in pytaxonkit are comparing it to the libraries listed below
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆55Updated 3 weeks ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 weeks ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 4 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆17Updated 8 months ago
- ☆31Updated 3 years ago
- A package to annotate protein sequences☆58Updated 2 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆48Updated 3 months ago
- Nail is an Alignment Inference tooL☆47Updated last week
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 4 months ago
- ☆17Updated 2 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- ☆29Updated 4 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 weeks ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆33Updated 2 months ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆48Updated 7 months ago
- ☆19Updated 3 years ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆21Updated 11 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆24Updated 2 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆17Updated 2 months ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆18Updated 3 months ago
- Efficient calculation of phylogenetic distance matrices.☆47Updated 6 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- snapper☆14Updated 9 months ago