☆14Sep 2, 2021Updated 4 years ago
Alternatives and similar repositories for MAGRE
Users that are interested in MAGRE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Updated this week
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36Sep 20, 2022Updated 3 years ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- ☆17Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Jun 3, 2025Updated 10 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated last month
- ☆51Mar 29, 2026Updated 2 weeks ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆36Apr 7, 2026Updated last week
- ☆71Mar 10, 2024Updated 2 years ago
- Prediction of microbial interactions in complex communities☆11Aug 14, 2024Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆50Oct 12, 2023Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data☆13Jan 28, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22May 14, 2023Updated 2 years ago
- ☆25Jun 20, 2023Updated 2 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Jun 3, 2025Updated 10 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Apr 4, 2026Updated last week
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated last year
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- SemiBin: metagenomics binning with self-supervised deep learning☆158Feb 19, 2026Updated last month
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆87Mar 12, 2026Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Oct 14, 2023Updated 2 years ago
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated last month
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆51Feb 8, 2022Updated 4 years ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Dec 30, 2025Updated 3 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- A simple script to display stuff on a world map with R and ggplot☆17Feb 17, 2026Updated last month
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆44Feb 17, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆69Mar 16, 2026Updated 3 weeks ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Mar 8, 2026Updated last month
- Hierarchical Graph Clustering using Node Pair Sampling (MLG, KDD Workshop) - Multi-scale Clustering in Graphs using Modularity (DiVA)☆17Oct 9, 2020Updated 5 years ago
- The binning tool with dynamic contrastive learning and deep language model☆22Nov 14, 2025Updated 5 months ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆24Jun 9, 2021Updated 4 years ago
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year