☆14Sep 2, 2021Updated 5 years ago
Alternatives and similar repositories for MAGRE
Users that are interested in MAGRE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Jun 17, 2026Updated 3 months ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 4 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 3 months ago
- ☆18Updated this week
- ☆18May 27, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆26Updated this week
- ☆12Jun 3, 2025Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 6 months ago
- ☆57Updated this week
- This is a repository for CAMPER.☆18Mar 18, 2024Updated 2 years ago
- Prediction of microbial interactions in complex communities☆14Aug 14, 2024Updated 2 years ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆14Mar 14, 2024Updated 2 years ago
- MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data☆13Jun 9, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆24May 14, 2023Updated 3 years ago
- ☆27Jun 20, 2023Updated 3 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated 2 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆175Updated this week
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆94May 11, 2026Updated 4 months ago
- ☆39May 20, 2026Updated 4 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆52Feb 8, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Oct 14, 2023Updated 2 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆56Oct 12, 2023Updated 2 years ago
- ☆84Aug 23, 2026Updated last month
- viralVerify: viral contig verification tool☆77Feb 19, 2026Updated 7 months ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆18Dec 30, 2025Updated 8 months ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆40Jul 27, 2026Updated last month
- The binning tool with dynamic contrastive learning and deep language model☆25Aug 14, 2026Updated last month
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- More scalable dereplication for metagenome assembled genomes☆88Sep 9, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆19Aug 7, 2026Updated last month
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆21Mar 8, 2026Updated 6 months ago
- A simple script to display stuff on a world map with R and ggplot☆18Feb 17, 2026Updated 7 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆46Feb 17, 2023Updated 3 years ago
- Hierarchical Graph Clustering using Node Pair Sampling (MLG, KDD Workshop) - Multi-scale Clustering in Graphs using Modularity (DiVA)☆17Oct 9, 2020Updated 5 years ago