mdmparis / defense-finderLinks
Systematic search of all known anti-phage systems.
☆128Updated last month
Alternatives and similar repositories for defense-finder
Users that are interested in defense-finder are comparing it to the libraries listed below
Sorting:
- Similarity networks of biosynthetic gene clusters☆145Updated this week
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated 2 months ago
- Supporting code for uncultivated gut virus manuscript☆76Updated 2 years ago
- Find clustered hits from a BLAST search☆126Updated 3 weeks ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆75Updated 7 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 5 months ago
- Phage Annotation using Protein Structures☆138Updated last week
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 7 months ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆100Updated 2 years ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆103Updated last year
- Bioinformatics tool for Locus Visualisation☆147Updated last month
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆158Updated 3 weeks ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 8 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 3 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆172Updated 3 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆99Updated 2 years ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆126Updated 3 months ago
- fast phage annotation program☆187Updated 2 weeks ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆97Updated 2 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆200Updated 3 months ago
- Mining CRISPRs in Environmental Datasets☆116Updated 2 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆90Updated 4 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated 3 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆229Updated 2 months ago
- ☆35Updated 5 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆265Updated last month
- Binning Virus Genomes from Metagenomes☆67Updated 3 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆66Updated 8 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆82Updated 11 months ago