mdmparis / defense-finderLinks
Systematic search of all known anti-phage systems.
☆125Updated last month
Alternatives and similar repositories for defense-finder
Users that are interested in defense-finder are comparing it to the libraries listed below
Sorting:
- Similarity networks of biosynthetic gene clusters☆141Updated last month
- Supporting code for uncultivated gut virus manuscript☆76Updated 2 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated last month
- Find clustered hits from a BLAST search☆126Updated last week
- Phage Annotation using Protein Structures☆134Updated last week
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆74Updated 7 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆157Updated 3 weeks ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 5 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆102Updated last year
- Bioinformatics tool for Locus Visualisation☆143Updated 3 weeks ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆98Updated 2 years ago
- fast phage annotation program☆184Updated last week
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆153Updated 6 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆171Updated 3 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 8 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆123Updated 2 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 6 months ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆15Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆80Updated 2 months ago
- ☆35Updated 4 months ago
- ☆31Updated 9 months ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆99Updated 2 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆270Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆199Updated 3 weeks ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆96Updated last month
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆199Updated 2 months ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated 3 weeks ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆82Updated 10 months ago