AlexanderLabWHOI / EukHeist
☆22Updated last year
Related projects: ⓘ
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆12Updated 6 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆28Updated 2 years ago
- Population genomics from metagenomes☆10Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆38Updated last week
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆44Updated 2 months ago
- ☆10Updated 11 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆19Updated last year
- Prophage Activity Estimator☆26Updated 3 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆17Updated last year
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆16Updated 8 months ago
- ☆15Updated 2 years ago
- ☆13Updated 2 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆24Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆45Updated last month
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆16Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆16Updated 7 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆27Updated this week
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆25Updated last week
- KEGG Module Evaluation Tool☆25Updated 10 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆27Updated 2 years ago
- ☆23Updated 5 years ago
- MAG Circularization Method☆31Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆10Updated last month
- MAGScoT - a MAG scoring and refinement tool☆27Updated last year
- ☆23Updated 7 months ago
- ☆24Updated this week