Alternatives and similar repositories for vRhyme

Users that are interested in vRhyme are comparing it to the libraries listed below

• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆49Updated 10 months ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆40Updated 7 months ago
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆53Updated 2 weeks ago
• songweizhi / MetaCHIP
  Horizontal gene transfer (HGT) identification pipeline
  ☆58Updated last year
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆57Updated last month
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆59Updated 2 weeks ago
• ziyewang / MetaBinner
  ☆53Updated last year
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆71Updated 4 months ago
• P-kai / EasyNanoMeta
  A pipeline for nanopore long-read metagenomic analysis.
  ☆37Updated 3 weeks ago
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆79Updated 2 weeks ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆31Updated 9 months ago
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆21Updated last year
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆71Updated 9 months ago
• feargalr / Demovir
  Taxonomic classification of viruses at Order and Family level
  ☆20Updated 2 years ago
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆60Updated 2 months ago
• KatariinaParnanen / MobileGeneticElementDatabase
  Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
  ☆46Updated 3 years ago
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆62Updated 4 months ago
• allind / EukDetect
  ☆50Updated last year
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆52Updated 5 years ago
• Carrion-lab / bacLIFE
  ☆45Updated 2 months ago
• apcamargo / ictv-mmseqs2-protein-database
  ☆32Updated 2 months ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆37Updated last year
• ziyewang / COMEBin
  ☆52Updated last year
• voorloopnul / awesome-phages
  A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
  ☆48Updated 2 years ago
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆47Updated this week
• christophertbrown / iRep
  scripts for estimating bacteria replication rates based on population genome copy number variation
  ☆72Updated 5 years ago
• nekokoe / Plasmer
  An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.
  ☆43Updated 2 years ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆42Updated last month
• soedinglab / WIsH
  Predict prokaryotic host for phage metagenomic sequences
  ☆52Updated 7 months ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆66Updated 2 weeks ago