Alternatives and similar repositories for vRhyme:

Users that are interested in vRhyme are comparing it to the libraries listed below

• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆53Updated this week
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆48Updated 7 months ago
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆52Updated 9 months ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆38Updated 4 months ago
• songweizhi / MetaCHIP
  Horizontal gene transfer (HGT) identification pipeline
  ☆56Updated last year
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆44Updated 3 weeks ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆60Updated 5 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆53Updated last week
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆18Updated 10 months ago
• Hydro3639 / NanoPhase
  Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …
  ☆31Updated last year
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆60Updated last month
• allind / EukDetect
  ☆48Updated 10 months ago
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆73Updated 5 months ago
• EBI-Metagenomics / EukCC
  Tool to estimate genome quality of microbial eukaryotes
  ☆36Updated 3 weeks ago
• ziyewang / MetaBinner
  ☆50Updated 11 months ago
• feargalr / Demovir
  Taxonomic classification of viruses at Order and Family level
  ☆20Updated last year
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆70Updated last month
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆64Updated 6 months ago
• linsalrob / PhiSpy
  Prediction of prophages from bacterial genomes
  ☆75Updated last year
• KennthShang / PhaBOX
  Local version of the virus identification and analysis web server (tool set)
  ☆42Updated last week
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆55Updated 5 months ago
• chengsly / DeepMicroClass
  ☆26Updated last week
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆97Updated 3 weeks ago
• hoelzer / pocp
  Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.
  ☆23Updated 3 months ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆51Updated 4 years ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆36Updated 4 months ago
• aldertzomer / RFPlasmid
  Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
  ☆48Updated 10 months ago
• philarevalo / PopCOGenT
  Microbial Populations as Clusters Of Gene Transfer
  ☆44Updated last year
• nekokoe / Plasmer
  An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.
  ☆42Updated last year
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆109Updated last week