AnantharamanLab / vRhymeLinks
Binning Virus Genomes from Metagenomes
☆68Updated 3 years ago
Alternatives and similar repositories for vRhyme
Users that are interested in vRhyme are comparing it to the libraries listed below
Sorting:
- ☆61Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 3 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆82Updated 2 weeks ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆83Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆53Updated last year
- ☆64Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- ☆54Updated 5 months ago
- Horizontal gene transfer (HGT) identification pipeline☆65Updated 2 years ago
- Prediction of prophages from bacterial genomes☆81Updated 6 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 10 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 4 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 8 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆52Updated 3 weeks ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated 2 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆83Updated 7 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Updated 4 years ago
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆76Updated 2 years ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆33Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated 2 weeks ago
- Unified Human Gut Virome Catalog☆39Updated last month
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆72Updated 5 years ago
- Reorients assembled microbial sequences☆131Updated 4 months ago
- ☆24Updated 7 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated last week
- ☆50Updated 3 weeks ago