Workflow to assign Taxonomy to a bacteriophage genome isolate
☆38Mar 25, 2025Updated 11 months ago
Alternatives and similar repositories for tax_myPHAGE
Users that are interested in tax_myPHAGE are comparing it to the libraries listed below
Sorting:
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- ☆38Dec 6, 2023Updated 2 years ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 3 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆58Jun 4, 2025Updated 9 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆79Apr 16, 2025Updated 10 months ago
- ☆11Jul 3, 2022Updated 3 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Dec 20, 2024Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆65Updated this week
- Assort phage protein sequences into phamilies using MMseqs2☆11Dec 16, 2024Updated last year
- Discover and annotate the virome☆59Feb 11, 2026Updated 3 weeks ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆35Sep 20, 2022Updated 3 years ago
- Phage Annotation using Protein Structures☆152Feb 9, 2026Updated last month
- Virus Identification☆25May 26, 2025Updated 9 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Jan 22, 2026Updated last month
- ☆13Feb 29, 2024Updated 2 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆106May 23, 2025Updated 9 months ago
- PHANOTATE: a gene caller for phages.☆84Dec 2, 2024Updated last year
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 3 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆44May 8, 2024Updated last year
- fast phage annotation program☆198Feb 1, 2026Updated last month
- geNomad: Identification of mobile genetic elements☆292Nov 10, 2025Updated 3 months ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- The viral taxonomic assignment pipeline☆43Feb 5, 2026Updated last month
- ☆17May 26, 2022Updated 3 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 3 months ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 3 years ago
- Validate and submit reads using Webin-CLI in batch.☆11Aug 3, 2023Updated 2 years ago
- Pipeline to create phage genome synteny graphics from genbank files☆14Oct 28, 2024Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- ☆22Dec 9, 2023Updated 2 years ago
- Bioinformatics tool for Locus Visualisation☆160Feb 28, 2026Updated last week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆236Oct 12, 2025Updated 4 months ago
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated 6 months ago
- ☆52May 5, 2025Updated 10 months ago