amillard / tax_myPHAGE
Workflow to assign Taxonomy to a bacteriophage genome isolate
☆26Updated last month
Alternatives and similar repositories for tax_myPHAGE
Users that are interested in tax_myPHAGE are comparing it to the libraries listed below
Sorting:
- ☆37Updated last year
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆32Updated last month
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 4 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆30Updated 2 weeks ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- ☆32Updated last year
- Unified Human Gut Virome Catalog☆31Updated 9 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated 3 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 10 months ago
- Prophage Activity Estimator☆26Updated 11 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 2 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 6 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 6 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- ☆25Updated last year
- Discover and annotate the virome☆42Updated last month
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- ☆20Updated 8 months ago
- Calculate assocations between genes and traits☆23Updated 2 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 4 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 7 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 7 months ago
- A simple program to classify the lifestyle of phages.☆17Updated last year
- Bacterial GWAS analysis☆40Updated 3 weeks ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 11 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago