Alternatives and similar repositories for ictv-mmseqs2-protein-database

Users that are interested in ictv-mmseqs2-protein-database are comparing it to the libraries listed below

• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆51Updated last year
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆28Updated last year
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆39Updated 3 years ago
• linsalrob / ProphagePredictionComparisons
  Comparisons of multiple different prophage predictions
  ☆26Updated 3 years ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆38Updated last week
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆35Updated 3 weeks ago
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆33Updated last year
• refresh-bio / vclust
  Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
  ☆92Updated 5 months ago
• EBI-Metagenomics / genome_uploader
  Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
  ☆25Updated this week
• apcamargo / prodigal-gv
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
  ☆40Updated 2 years ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆37Updated 2 years ago
• marbl / binnacle
  Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
  ☆15Updated 3 years ago
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆46Updated 7 months ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated 3 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆67Updated this week
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆54Updated 5 years ago
• michaelkyu / MobMess
  ☆21Updated 3 years ago
• wwood / galah
  More scalable dereplication for metagenome assembled genomes
  ☆71Updated 2 weeks ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆32Updated 2 years ago
• metagentools / MetaCoAG
  🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
  ☆67Updated last year
• ziyewang / MetaBinner
  ☆59Updated last year
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆81Updated last month
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆51Updated last month
• CristinaMoraru / VIRIDIC
  VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.
  ☆17Updated 2 years ago
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆50Updated 2 months ago
• liu-congcong / MetaDecoder
  An algorithm for clustering metagenomic sequences.
  ☆39Updated 7 months ago
• ziyewang / COMEBin
  ☆62Updated last year
• susiegriggo / Phynteny
  Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
  ☆55Updated 5 months ago
• soedinglab / WIsH
  Predict prokaryotic host for phage metagenomic sequences
  ☆52Updated last year
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆38Updated last month