mtisza1 / Cenote-Taker3Links
Discover and annotate the virome
☆46Updated last month
Alternatives and similar repositories for Cenote-Taker3
Users that are interested in Cenote-Taker3 are comparing it to the libraries listed below
Sorting:
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated 3 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Bacterial GWAS analysis☆43Updated last month
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 weeks ago
- Unified Human Gut Virome Catalog☆34Updated last year
- MAG Circularization Method☆33Updated 3 years ago
- ☆29Updated 2 years ago
- Assessing and Improving the quality of metagenomic assemblies☆29Updated 3 years ago
- Calculate assocations between genes and traits☆25Updated 5 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- BEAV: Bacterial Element Annotation reVamped☆67Updated last week
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 4 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 4 months ago
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆59Updated last week
- IslandPath standalone software☆33Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated last month
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 3 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Gene-flank analysis tool☆29Updated 8 months ago
- ☆26Updated 2 years ago
- Prophage Activity Estimator☆26Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago