VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
☆153Aug 10, 2026Updated last week
Alternatives and similar repositories for emg-viral-pipeline
Users that are interested in emg-viral-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆39Apr 9, 2026Updated 4 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆76Updated this week
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- geNomad: Identification of mobile genetic elements☆328Mar 29, 2026Updated 4 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆219Apr 24, 2026Updated 3 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆83Apr 16, 2025Updated last year
- ☆37Dec 6, 2023Updated 2 years ago
- WtP: Phage identification via nextflow and docker or singularity☆107Aug 11, 2026Updated last week
- Variational autoencoder for metagenomic binning☆331Apr 27, 2026Updated 3 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 2 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆84Updated this week
- Virus Identification By iteRative ANnoTation☆202Apr 15, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The viral taxonomic assignment pipeline☆45Apr 16, 2026Updated 4 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆298Nov 28, 2024Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆234Jul 29, 2026Updated 2 weeks ago
- Systematic search of all known anti-phage systems.☆183May 5, 2026Updated 3 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated 2 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)☆116Aug 5, 2026Updated 2 weeks ago
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆336Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 5 months ago
- Prediction of microbial interactions in complex communities☆14Aug 14, 2024Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆666Aug 7, 2026Updated last week
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 2 months ago
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆35Dec 4, 2025Updated 8 months ago
- Improvement of metagenome-assembled genomes☆57Mar 17, 2020Updated 6 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆91Mar 12, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Discover and annotate the virome☆64Jun 10, 2026Updated 2 months ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆107Jul 14, 2026Updated last month
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆19Jul 27, 2022Updated 4 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated last month
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated 11 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆261May 13, 2026Updated 3 months ago