EBI-Metagenomics / emg-viral-pipelineLinks
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
☆144Updated 3 weeks ago
Alternatives and similar repositories for emg-viral-pipeline
Users that are interested in emg-viral-pipeline are comparing it to the libraries listed below
Sorting:
- Bioinformatics program inStrain☆178Updated 6 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆226Updated last month
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- Metagenomic classification of long-read sequencing data☆95Updated 2 weeks ago
- A toolbox for comparative genomics.☆106Updated 4 years ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 2 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆144Updated 2 months ago
- Bioinformatics tool for Locus Visualisation☆143Updated 2 weeks ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆81Updated 10 months ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆143Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆121Updated 2 weeks ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆146Updated last month
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 7 months ago
- Supporting code for uncultivated gut virus manuscript☆75Updated 2 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆116Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- DAS Tool☆162Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆98Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆113Updated last year
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆138Updated 2 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆74Updated 6 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 7 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆262Updated last month
- A toolbox for pangenome analysis and threshold evaluation.☆101Updated 3 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆79Updated 2 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆169Updated last week