🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
☆85Dec 4, 2025Updated 5 months ago
Alternatives and similar repositories for phables
Users that are interested in phables are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆43May 5, 2026Updated 2 weeks ago
- Phage Annotation using Protein Structures☆160May 13, 2026Updated last week
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆60Jun 4, 2025Updated 11 months ago
- fast phage annotation program☆210Apr 21, 2026Updated 3 weeks ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆39Apr 20, 2026Updated last month
- ☆38Dec 6, 2023Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- geNomad: Identification of mobile genetic elements☆312Mar 29, 2026Updated last month
- A hybrid assembly and MAG recovery pipeline (and more!)☆107May 6, 2026Updated 2 weeks ago
- ☆87Updated this week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆74Mar 14, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Reorients assembled microbial sequences☆137Aug 21, 2025Updated 8 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆108May 23, 2025Updated 11 months ago
- ☆26Jun 20, 2023Updated 2 years ago
- A tool for identifying active prophage elements through read mapping☆13Oct 9, 2023Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Apr 29, 2026Updated 3 weeks ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆82Apr 16, 2025Updated last year
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last month
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆36Jan 22, 2026Updated 3 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆75Mar 3, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆303Feb 3, 2026Updated 3 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆250May 13, 2026Updated last week
- Prediction of prophages from bacterial genomes☆84May 1, 2026Updated 2 weeks ago
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆45May 8, 2026Updated last week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆187Updated this week
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆151Updated this week
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Oct 3, 2025Updated 7 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆88Mar 12, 2026Updated 2 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆27Nov 2, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆22Dec 9, 2023Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆72Dec 1, 2025Updated 5 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆184Mar 17, 2026Updated 2 months ago
- WtP: Phage identification via nextflow and docker or singularity☆105Mar 19, 2026Updated 2 months ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 10 months ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 2 months ago