ablab / viralVerify
viralVerify: viral contig verification tool
☆69Updated 3 years ago
Alternatives and similar repositories for viralVerify
Users that are interested in viralVerify are comparing it to the libraries listed below
Sorting:
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- Supporting code for uncultivated gut virus manuscript☆72Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆78Updated 8 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 8 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 11 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆102Updated 3 weeks ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆71Updated 9 months ago
- ARG normalization by mapping to the ARO ontology.☆57Updated 3 weeks ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆62Updated 4 months ago
- Microbiome classification pipeline☆66Updated this week
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated 2 weeks ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆79Updated 2 weeks ago
- DDBJ Fast Annotation and Submission Tool☆80Updated 2 weeks ago
- Horizontal gene transfer (HGT) identification pipeline☆58Updated 2 years ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆49Updated last year
- Prediction of prophages from bacterial genomes☆78Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆47Updated this week
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆119Updated last year
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆66Updated 2 weeks ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆58Updated 4 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆52Updated last year
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆71Updated 4 months ago
- Convert GTDB taxonomy to NCBI taxdump format☆70Updated last year