viralVerify: viral contig verification tool
☆74Feb 19, 2026Updated last month
Alternatives and similar repositories for viralVerify
Users that are interested in viralVerify are comparing it to the libraries listed below
Sorting:
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 5 years ago
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Mining CRISPRs in Environmental Datasets☆119Feb 10, 2023Updated 3 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆35Sep 20, 2022Updated 3 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 10 months ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆55Jan 19, 2024Updated 2 years ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆283Nov 28, 2024Updated last year
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- Discover and annotate the virome☆59Feb 11, 2026Updated last month
- Virus Identification By iteRative ANnoTation☆190Apr 15, 2024Updated last year
- ☆34Oct 6, 2025Updated 5 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆107Feb 15, 2024Updated 2 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆41Feb 26, 2026Updated 3 weeks ago
- ☆18May 13, 2021Updated 4 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated last year
- Systematic search of all known anti-phage systems.☆146Jan 22, 2026Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆323Updated this week
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆80Apr 16, 2025Updated 11 months ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Oct 16, 2024Updated last year
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- ☆26Jan 30, 2025Updated last year
- Read alignment statistics for metagenomics☆392Updated this week
- De novo VIral Genome Annotator☆24Jan 11, 2026Updated 2 months ago
- PHANOTATE: a gene caller for phages.☆84Dec 2, 2024Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- ☆35Dec 20, 2023Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆296Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 weeks ago