Alternatives and similar repositories for viralVerify

Users that are interested in viralVerify are comparing it to the libraries listed below

• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆66Updated 3 years ago
• ziyewang / COMEBin
  ☆62Updated last year
• bobeobibo / phigaro
  Phigaro is a scalable command-line tool for predicting phages and prophages
  ☆53Updated last year
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 4 years ago
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆50Updated last month
• linsalrob / PhiSpy
  Prediction of prophages from bacterial genomes
  ☆81Updated 4 months ago
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆78Updated last month
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆85Updated 2 years ago
• BigDataBiology / argNorm
  ARG normalization by mapping to the ARO ontology.
  ☆59Updated 3 months ago
• refresh-bio / vclust
  Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
  ☆91Updated 5 months ago
• jolespin / veba
  A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…
  ☆97Updated 2 weeks ago
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆78Updated last month
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆55Updated 6 months ago
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆85Updated 5 months ago
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆61Updated 8 months ago
• ibe-uw / tiara
  tiara – a tool for DNA sequence classification
  ☆69Updated last year
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆73Updated 5 months ago
• patrickwest / EukRep
  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
  ☆75Updated last year
• soedinglab / WIsH
  Predict prokaryotic host for phage metagenomic sequences
  ☆52Updated last year
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆75Updated 2 years ago
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆105Updated 4 years ago
• voorloopnul / awesome-phages
  A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
  ☆50Updated 3 years ago
• gem-pasteur / PanACoTA
  PANgenome with Annotations, COre identification, Tree and corresponding Alignments
  ☆74Updated 2 years ago
• rrwick / Assembly-Dereplicator
  A tool for removing redundant genomes from a set of assemblies
  ☆77Updated last month
• songweizhi / MetaCHIP
  Horizontal gene transfer (HGT) identification pipeline
  ☆63Updated 2 years ago
• wwood / galah
  More scalable dereplication for metagenome assembled genomes
  ☆71Updated 3 weeks ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆124Updated 2 years ago
• vrmarcelino / CCMetagen
  Microbiome classification pipeline
  ☆65Updated 5 months ago
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆98Updated 2 years ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated 2 months ago