timghaly / EcoFoldDBLinks
Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.
☆16Updated this week
Alternatives and similar repositories for EcoFoldDB
Users that are interested in EcoFoldDB are comparing it to the libraries listed below
Sorting:
- ☆21Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆43Updated 6 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 3 months ago
- ☆16Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆25Updated 2 months ago
- This is a repository for CAMPER.☆14Updated last year
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆16Updated 2 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated 9 months ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- KEGG Module Evaluation Tool☆30Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated last week
- ☆26Updated 2 years ago
- Prophage Activity Estimator☆26Updated last year
- MAGinator - Accurate SNV calling and profiling of MAGs☆22Updated last month
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 3 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated last week
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- ☆32Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- ☆39Updated last month
- ☆37Updated last year
- Population genomics from metagenomes☆12Updated 10 months ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago