timghaly / EcoFoldDB
Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.
☆11Updated last week
Alternatives and similar repositories for EcoFoldDB:
Users that are interested in EcoFoldDB are comparing it to the libraries listed below
- ☆25Updated last year
- ☆13Updated last year
- Population genomics from metagenomes☆11Updated 7 months ago
- ☆16Updated 3 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆12Updated last year
- ☆19Updated 3 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆33Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 10 months ago
- Prophage Activity Estimator☆26Updated 10 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 8 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- http://huttenhower.sph.harvard.edu/waafle☆13Updated 3 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 3 months ago
- MAG Circularization Method☆33Updated 2 years ago
- A functional profiler for metagenomes using FracMinHash☆16Updated 2 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- ☆15Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 5 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆23Updated 6 months ago
- Calculate assocations between genes and traits☆23Updated last month
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 9 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆13Updated 9 months ago
- ☆13Updated 7 years ago