Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.
☆34Nov 2, 2025Updated 10 months ago
Alternatives and similar repositories for EcoFoldDB
Users that are interested in EcoFoldDB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Jun 20, 2023Updated 3 years ago
- FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes☆21Dec 26, 2025Updated 8 months ago
- Discovery of conserved gene clusters in multiple genomes☆135Aug 21, 2026Updated last week
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Aug 24, 2026Updated last week
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Oct 14, 2023Updated 2 years ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Updated this week
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆23Aug 20, 2026Updated last week
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 7 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆118Updated this week
- ☆17Updated this week
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Updated this week
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆46Feb 17, 2023Updated 3 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆69Mar 16, 2026Updated 5 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆232Mar 24, 2026Updated 5 months ago
- This is a repository for CAMPER.☆18Mar 18, 2024Updated 2 years ago
- ☆56Mar 29, 2026Updated 5 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- ☆83Aug 23, 2026Updated last week
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Assessing the quality of metagenome-derived genome bins using machine learning☆276Mar 20, 2025Updated last year
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆19Mar 17, 2021Updated 5 years ago
- Similarity networks of biosynthetic gene clusters☆179Apr 1, 2026Updated 5 months ago
- The binning tool with dynamic contrastive learning and deep language model☆25Aug 14, 2026Updated 2 weeks ago
- tree visualization for tree + annotation data☆61Jun 17, 2025Updated last year
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- ☆52May 29, 2026Updated 3 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline