Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.
☆33Nov 2, 2025Updated 11 months ago
Alternatives and similar repositories for EcoFoldDB
Users that are interested in EcoFoldDB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Jun 20, 2023Updated 3 years ago
- FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes☆21Dec 26, 2025Updated 9 months ago
- ☆19Updated this week
- Discovery of conserved gene clusters in multiple genomes☆135Sep 30, 2026Updated last week
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Sep 7, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆78Updated this week
- ☆15Oct 14, 2023Updated 2 years ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Aug 28, 2026Updated last month
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆26Oct 6, 2026Updated last week
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆30Jan 15, 2026Updated 8 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Updated this week
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆67Aug 28, 2026Updated last month
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- SemiBin: metagenomics binning with self-supervised deep learning☆175Oct 1, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆47Feb 17, 2023Updated 3 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆71Mar 16, 2026Updated 6 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆232Mar 24, 2026Updated 6 months ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆21May 11, 2022Updated 4 years ago
- This is a repository for CAMPER.☆18Mar 18, 2024Updated 2 years ago
- ☆57Sep 17, 2026Updated 3 weeks ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- ☆85Aug 23, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Read alignment statistics for metagenomics☆406Sep 23, 2026Updated 2 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆280Mar 20, 2025Updated last year
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆22Mar 17, 2021Updated 5 years ago
- Similarity networks of biosynthetic gene clusters☆178Oct 5, 2026Updated last week
- The binning tool with dynamic contrastive learning and deep language model☆26Oct 1, 2026Updated last week
- tree visualization for tree + annotation data☆69Jun 17, 2025Updated last year
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- ☆52May 29, 2026Updated 4 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ⚡🦠🧬📇 Rapid microbial genomes-to-report pipeline☆75Sep 23, 2026Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆64Sep 1, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆325Updated this week
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆14Mar 14, 2024Updated 2 years ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆228Sep 22, 2026Updated 3 weeks ago
- A comprehensive prokaryotic genome annotation pipeline☆92Sep 4, 2026Updated last month
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year