gatech-genemark / MetaGeneMark-2Links
MetaGeneMark-2: Improved Gene Prediction in Metagenomes
☆22Updated last year
Alternatives and similar repositories for MetaGeneMark-2
Users that are interested in MetaGeneMark-2 are comparing it to the libraries listed below
Sorting:
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- Discover and annotate the virome☆54Updated last month
- Bacterial GWAS analysis☆46Updated last month
- Automatic eukaryotic taxonomic classification☆28Updated 6 months ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆17Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated 2 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated this week
- Prophage Activity Estimator☆28Updated last year
- ☆33Updated last year
- Calculate assocations between genes and traits☆29Updated 8 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- MAG Circularization Method☆32Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- ☆20Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- ☆60Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆39Updated 2 months ago
- Unified Human Gut Virome Catalog☆38Updated 3 weeks ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 2 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 7 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 8 months ago