gatech-genemark / MetaGeneMark-2Links
MetaGeneMark-2: Improved Gene Prediction in Metagenomes
☆22Updated last year
Alternatives and similar repositories for MetaGeneMark-2
Users that are interested in MetaGeneMark-2 are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- Discover and annotate the virome☆46Updated last month
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- Automatic eukaryotic taxonomic classification☆29Updated 3 months ago
- Bacterial GWAS analysis☆43Updated last month
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated 3 weeks ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆16Updated 2 years ago
- KEGG Module Evaluation Tool☆30Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 3 weeks ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 4 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- Calculate assocations between genes and traits☆25Updated 5 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- IslandPath standalone software☆33Updated last year
- whole genome MLST analysis☆46Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 4 months ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- MAG Circularization Method☆33Updated 3 years ago
- ☆53Updated last month
- ☆56Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆47Updated 5 months ago
- ☆20Updated 11 months ago