gatech-genemark / MetaGeneMark-2
MetaGeneMark-2: Improved Gene Prediction in Metagenomes
☆21Updated last year
Alternatives and similar repositories for MetaGeneMark-2:
Users that are interested in MetaGeneMark-2 are comparing it to the libraries listed below
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 10 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- Discover and annotate the virome☆41Updated 3 weeks ago
- ☆20Updated 8 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Prophage Activity Estimator☆26Updated 11 months ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated last week
- KEGG Module Evaluation Tool☆29Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated this week
- Unified Human Gut Virome Catalog☆31Updated 9 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆30Updated this week
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 6 months ago
- IslandPath standalone software☆32Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- ☆24Updated 6 years ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆13Updated last year
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- Bacterial GWAS analysis☆40Updated 2 weeks ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Assessing and Improving the quality of metagenomic assemblies☆28Updated 3 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated last week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated last year
- Calculate assocations between genes and traits☆23Updated last month