gatech-genemark / MetaGeneMark-2View external linksLinks
MetaGeneMark-2: Improved Gene Prediction in Metagenomes
☆22Mar 22, 2024Updated last year
Alternatives and similar repositories for MetaGeneMark-2
Users that are interested in MetaGeneMark-2 are comparing it to the libraries listed below
Sorting:
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆34Sep 20, 2022Updated 3 years ago
- Virus Identification☆25May 26, 2025Updated 8 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆87Dec 27, 2024Updated last year
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated last month
- MetaSNV, a metagenomic SNV calling pipeline.☆20Mar 25, 2022Updated 3 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- ☆18Apr 6, 2022Updated 3 years ago
- Automatically calculate phylogenetic trees from bacterial core genes☆20May 13, 2025Updated 9 months ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆28Updated this week
- A package to annotate protein sequences☆61Feb 23, 2025Updated 11 months ago
- ☆10Mar 24, 2025Updated 10 months ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10May 17, 2024Updated last year
- ☆11Apr 5, 2021Updated 4 years ago
- Small variant calling for haploid samples☆48Jan 5, 2026Updated last month
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22May 14, 2023Updated 2 years ago
- ☆22Nov 12, 2025Updated 3 months ago
- geNomad: Identification of mobile genetic elements☆286Nov 10, 2025Updated 3 months ago
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- ☆26Jun 20, 2023Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 5, 2026Updated last week
- post processing of bacterial pangenome gene presence/absence matrices☆63Jan 19, 2026Updated 3 weeks ago
- tree-aggregated compositional analysis for high-throughput sequencing data☆10Aug 24, 2022Updated 3 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 6 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated last year
- Quality control plotting for long reads☆10May 14, 2024Updated last year
- Binning Virus Genomes from Metagenomes☆70Jul 13, 2022Updated 3 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Sep 15, 2025Updated 4 months ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆13Mar 7, 2019Updated 6 years ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Dec 30, 2025Updated last month
- Package that facilitates pulling database entries from KEGG via its REST API☆11Aug 30, 2023Updated 2 years ago
- The viral taxonomic assignment pipeline☆42Feb 5, 2026Updated last week
- Improvement of metagenome-assembled genomes☆54Mar 17, 2020Updated 5 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- ☆82Nov 27, 2025Updated 2 months ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆53Feb 4, 2026Updated last week
- Population genomics from metagenomes☆12Sep 1, 2024Updated last year