Alternatives and similar repositories for MetaCoAG

Users that are interested in MetaCoAG are comparing it to the libraries listed below

• metagentools / GraphBin2
  ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
  ☆37Updated 3 weeks ago
• ku-cbd / PhageBoost
  Rapid discovery of novel prophages using biological feature engineering and machine learning
  ☆36Updated 11 months ago
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆53Updated 4 years ago
• MicrobialDarkMatter / GraphMB
  ☆35Updated 2 years ago
• apcamargo / ictv-mmseqs2-protein-database
  ☆31Updated last month
• wwood / galah
  More scalable dereplication for metagenome assembled genomes
  ☆71Updated 2 weeks ago
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆90Updated 6 months ago
• apcamargo / prodigal-gv
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
  ☆41Updated 2 years ago
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆48Updated 2 years ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆56Updated 7 months ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆51Updated last month
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆51Updated last year
• LottePronk / whokaryote
  Classify metagenomic contigs as eukaryotic or prokaryotic
  ☆41Updated 2 years ago
• refresh-bio / vclust
  Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
  ☆92Updated 5 months ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆38Updated last week
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆95Updated last month
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆81Updated last month
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated 2 years ago
• iqbal-lab-org / pling
  Plasmid analysis using rearrangement distances
  ☆46Updated 2 months ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆54Updated 5 years ago
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆35Updated this week
• rrwick / Verticall
  Recombination-free trees
  ☆60Updated 2 months ago
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆33Updated last year
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆53Updated last month
• bluenote-1577 / fairy
  alignment-free coverage calculation for metagenomic binning >100 times faster
  ☆48Updated 8 months ago
• karel-brinda / MiniPhy
  Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
  ☆43Updated 7 months ago
• zoubohao / Deepurify
  Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.
  ☆22Updated 5 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆67Updated this week
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated 3 months ago
• althonos / pyorthoani
  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
  ☆31Updated 4 months ago