🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
☆69Sep 26, 2024Updated last year
Alternatives and similar repositories for MetaCoAG
Users that are interested in MetaCoAG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 6 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆148Apr 5, 2026Updated last month
- Graph-based assembly phasing☆94Nov 25, 2025Updated 5 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated 2 months ago
- ☆36Nov 20, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A hybrid assembly and MAG recovery pipeline (and more!)☆107May 6, 2026Updated last week
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆85Dec 4, 2025Updated 5 months ago
- Improvement of metagenome-assembled genomes☆58Mar 17, 2020Updated 6 years ago
- ✨🧬 Refined binning of metagenomic contigs using assembly graphs☆98Mar 6, 2025Updated last year
- ☆64Feb 27, 2024Updated 2 years ago
- viralVerify: viral contig verification tool☆75Feb 19, 2026Updated 3 months ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆91May 11, 2026Updated last week
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆26Jun 20, 2023Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆263Mar 20, 2025Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Apr 29, 2026Updated 3 weeks ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆215May 9, 2026Updated last week
- Variational autoencoder for metagenomic binning☆327Apr 27, 2026Updated 3 weeks ago
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- Read alignment statistics for metagenomics☆397Apr 8, 2026Updated last month
- Pipeline for major biological analyses.☆35Mar 30, 2022Updated 4 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Classify metagenomic contigs as eukaryotic or prokaryotic☆45Feb 17, 2023Updated 3 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated 6 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆162Apr 25, 2026Updated 3 weeks ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 8 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆43May 5, 2026Updated 2 weeks ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆30Jan 15, 2026Updated 4 months ago
- 🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit☆24Apr 23, 2026Updated 3 weeks ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆37Apr 7, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated 4 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆200May 5, 2026Updated 2 weeks ago
- sensitive and precise assembly of short sequencing reads☆167Oct 11, 2024Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 4 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36Sep 20, 2022Updated 3 years ago