π¦π§¬ Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
β69Aug 28, 2026Updated 3 weeks ago
Alternatives and similar repositories for MetaCoAG
Users that are interested in MetaCoAG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- β―οΈπ§¬ Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphsβ37Oct 24, 2025Updated 10 months ago
- Graph-based assembly phasingβ102Nov 25, 2025Updated 9 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.β25Feb 22, 2026Updated 6 months ago
- A new high-resolution long-read metagenome assembler for even noisy readsβ170Sep 9, 2026Updated last week
- β36Aug 7, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting β’ AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A hybrid assembly and MAG recovery pipeline (and more!)β119Sep 9, 2026Updated last week
- π«§π§¬ From fragmented assemblies to high-quality bacteriophage genomesβ86Sep 7, 2026Updated last week
- Improvement of metagenome-assembled genomesβ59Mar 17, 2020Updated 6 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.β34Nov 2, 2025Updated 10 months ago
- β¨π§¬ Refined binning of metagenomic contigs using assembly graphsβ98Mar 6, 2025Updated last year
- β65Feb 27, 2024Updated 2 years ago
- viralVerify: viral contig verification toolβ77Feb 19, 2026Updated 7 months ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Compositionβ20Sep 4, 2026Updated 2 weeks ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.β231May 9, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python package for detection of chimerism and contamination in prokaryotic genomes.β94May 11, 2026Updated 4 months ago
- β27Jun 20, 2023Updated 3 years ago
- π𧬠GraphBin-Tk: assembly graph-based metagenomic binning toolkitβ24Jun 25, 2026Updated 2 months ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmaxβ37Aug 28, 2026Updated 3 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learningβ278Mar 20, 2025Updated last year
- Variational autoencoder for metagenomic binningβ331Apr 27, 2026Updated 4 months ago
- Assessing the quality of prokaryotic genomes, filtering and dereplicationβ11Aug 26, 2022Updated 4 years ago
- Read alignment statistics for metagenomicsβ406Jul 10, 2026Updated 2 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing dataβ30Jan 15, 2026Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available β’ AdRun AI, ML, and HPC workloads on powerful cloud GPUsβwithout limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Pipeline for major biological analyses.β35Mar 30, 2022Updated 4 years ago
- Quickly generate consensus assemblies for bacterial genomesβ14Sep 12, 2025Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryoticβ46Feb 17, 2023Updated 3 years ago
- MAG Circularization Methodβ33Nov 4, 2025Updated 10 months ago
- SemiBin: metagenomics binning with self-supervised deep learningβ175Updated this week
- Microbial agile accurate SNP Typerβ30Dec 27, 2023Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.β72Apr 10, 2025Updated last year
- Strain resolver for metagenomicsβ82Aug 2, 2024Updated 2 years ago
- Clustering tool optimized for sparse distance matrices: ~16M elements with ~190M connections clustered in minutes.β16Sep 12, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!β46Jun 1, 2026Updated 3 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/biβ¦β19Apr 4, 2023Updated 3 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.β64Sep 1, 2026Updated 2 weeks ago
- Metagenomic Binning Algorithmβ55Updated this week
- Remove contaminated contigs from genomes using k-mers and taxonomies.β60Nov 3, 2023Updated 2 years ago
- gemsparcl πβ¨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic lifeβ18Jun 16, 2026Updated 3 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.β208Jun 10, 2026Updated 3 months ago