metagentools / MetaCoAG
🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
☆59Updated last month
Related projects ⓘ
Alternatives and complementary repositories for MetaCoAG
- ☆35Updated last year
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆33Updated last month
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆39Updated 3 months ago
- ☆38Updated 8 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 7 months ago
- ☆23Updated 9 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆36Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆51Updated 6 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆25Updated last week
- Graph-based assembly phasing☆66Updated 3 weeks ago
- ☆30Updated 11 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆52Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆25Updated last week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 7 months ago
- Bacterial GWAS analysis☆32Updated last month
- Recombination-free trees☆56Updated last year
- IslandPath standalone software☆31Updated last year
- ☆28Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆49Updated last month
- Strain Resolution ON Graphs☆47Updated last year
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆26Updated 5 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- Binning Virus Genomes from Metagenomes☆58Updated 2 years ago
- Gene-flank analysis tool☆26Updated 6 months ago
- Phage prediction tools☆15Updated last year