Alternatives and similar repositories for viralMetagenomicsPipeline

Users that are interested in viralMetagenomicsPipeline are comparing it to the libraries listed below

• Matthijnssenslab / ViPER
  Bioinformatics pipeline used in the Laboratory of Viral Metagenomics (KU Leuven) to trim and assemble paired-end Illumina reads, and clas…
  ☆8Updated 2 months ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 11 months ago
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆23Updated last year
• CCB-SB / plsdb
  PLSDB pipeline to collect bacterial plasmids from NCBI
  ☆38Updated 6 months ago
• michaelkyu / MobMess
  ☆20Updated 3 years ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆34Updated 3 years ago
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆21Updated last year
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
  ☆45Updated 3 weeks ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• ku-cbd / PhageBoost
  Rapid discovery of novel prophages using biological feature engineering and machine learning
  ☆37Updated 4 months ago
• deprekate / PHACTS
  A simple program to classify the lifestyle of phages.
  ☆17Updated last year
• WangLab-SCSIO / Prophage_Tracer
  Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment
  ☆24Updated 7 months ago
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆30Updated 9 months ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆31Updated 10 months ago
• MattiaPandolfoVR / MetaPhage
  ☆37Updated last year
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆32Updated last year
• deng-lab / viroprofiler
  A containerized bioinformatics pipeline for viral metagenomic data analysis
  ☆31Updated 9 months ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆28Updated last year
• crazyinter / RNN-VirSeeker
  This is a deep learning method for identification of viral contigs with short length from metagenomic data.
  ☆10Updated 3 years ago
• AlexanderLabWHOI / EukHeist
  ☆25Updated last year
• putonti / virMine
  ☆18Updated 3 years ago
• stajichlab / biosample_metadata
  Extract metadata from biosamples in NCBI
  ☆14Updated 4 years ago
• SegataLab / viromeqc
  ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…
  ☆19Updated 2 years ago
• cmmr / Marker-MAGu
  Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes
  ☆19Updated last year
• danielchang2002 / TaxiBGC_2022
  Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…
  ☆15Updated last year
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆32Updated 8 months ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆35Updated 3 weeks ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆24Updated 9 months ago
• chg60 / DEPhT
  Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
  ☆20Updated 5 months ago
• cmmr / EsViritu
  Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
  ☆24Updated last year