wclose / viralMetagenomicsPipelineLinks
Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
☆13Updated 5 years ago
Alternatives and similar repositories for viralMetagenomicsPipeline
Users that are interested in viralMetagenomicsPipeline are comparing it to the libraries listed below
Sorting:
- The Microbial Co-occurrence Network Explorer☆21Updated 2 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- MAG Circularization Method☆32Updated 3 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last month
- ☆16Updated 3 weeks ago
- Discover and annotate the virome☆53Updated 2 weeks ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- ☆10Updated 3 weeks ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 8 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆33Updated 3 years ago
- Repository for general metagenomics Nextflow pipeline☆23Updated last month
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆49Updated 10 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆22Updated 2 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- TransAnnot - a fast transcriptome annotation pipeline☆19Updated 9 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆64Updated last week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- ☆21Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆38Updated 3 years ago
- ☆38Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆23Updated last month
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- ☆45Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated last month
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 9 months ago