wclose / viralMetagenomicsPipeline
Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
☆12Updated 4 years ago
Alternatives and similar repositories for viralMetagenomicsPipeline:
Users that are interested in viralMetagenomicsPipeline are comparing it to the libraries listed below
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- Extract metadata from biosamples in NCBI☆12Updated 3 years ago
- Prophage Activity Estimator☆26Updated 8 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 3 years ago
- ☆19Updated 3 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆20Updated last year
- KEGG Module Evaluation Tool☆28Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆23Updated 4 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆37Updated 3 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 10 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆43Updated this week
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆23Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆23Updated 3 weeks ago
- Discover and annotate the virome☆36Updated 4 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆34Updated 2 months ago
- ☆25Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆28Updated 6 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆53Updated last week
- Unified Human Gut Virome Catalog☆27Updated 7 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 7 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 2 months ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- ☆28Updated this week
- ☆18Updated 2 years ago
- ☆31Updated last year