wclose / viralMetagenomicsPipeline
Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
☆11Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for viralMetagenomicsPipeline
- Prophage Activity Estimator☆26Updated 5 months ago
- ☆23Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 3 months ago
- KEGG Module Evaluation Tool☆26Updated 11 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Extract metadata from biosamples in NCBI☆11Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆29Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated last week
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆24Updated 3 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆17Updated 7 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆18Updated last year
- Population genomics from metagenomes☆11Updated 2 months ago
- Microbial agile accurate SNP Typer☆29Updated 10 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- ☆36Updated 11 months ago
- Discover and annotate the virome☆31Updated 3 weeks ago
- Bacterial GWAS analysis☆31Updated last month
- Integrative virome pipeline☆10Updated this week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last month
- ☆18Updated 2 years ago
- viralComplete: BLAST-based viral completeness verification☆23Updated 3 years ago
- viralFlye pipeline☆19Updated 2 months ago
- ☆30Updated 10 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago