Alternatives and similar repositories for Protologger

Users that are interested in Protologger are comparing it to the libraries listed below

• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆21Updated last year
• katholt / reddog-nf
  pipeline for read mapping, snp calling and annotation for bacterial genomes
  ☆13Updated last year
• yosuken / ccfind
  ccfind - circular complete genome finder with clues of terminal redundancy
  ☆15Updated 5 years ago
• quadram-institute-bioscience / dadaist2
  Dadaist2 🟨 Highway to R
  ☆13Updated 7 months ago
• chg60 / phammseqs
  Assort phage protein sequences into phamilies using MMseqs2
  ☆11Updated 10 months ago
• EBI-Metagenomics / kegg-pathways-completeness-tool
  ☆28Updated 9 months ago
• thackl / proovframe
  frame-shift correction for long-read (meta)genomics
  ☆33Updated last year
• EnzoAndree / FastMLST
  ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
  ☆27Updated 2 weeks ago
• erinyoung / roundabout
  Finding regions of similarity between plasmids
  ☆16Updated 2 years ago
• katholt / AMRrules
  Organism-specific interpretation of AMR genotypes
  ☆14Updated last year
• Arkadiy-Garber / MagicLamp
  A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
  ☆14Updated last year
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• stjacqrm / centroid
  tool to determine optimal refrerence genome given a set of fasta files
  ☆15Updated 2 years ago
• moshi4 / plot_genome_align_fig
  Plot genome alignment figure using progressiveMauve & genoPlotR
  ☆22Updated 3 years ago
• laxeye / zga
  ZGA prokaryotic genome assembly and annotation pipeline
  ☆13Updated last year
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆25Updated last year
• lmc297 / bactaxR
  Bacterial taxonomy construction and evaluation in R
  ☆14Updated last year
• aweimann / traitar
  ☆22Updated 2 years ago
• cchauve / HyAsP
  Hybrid Assembler for Plasmids
  ☆10Updated 3 years ago
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆28Updated 7 months ago
• moritzbuck / mOTUlizer
  Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin
  ☆14Updated last year
• quevan / phlame
  ☆12Updated 2 months ago
• AMRverse / AMRrules
  Interpretative standards for AMR genotypes
  ☆25Updated last week
• AfZheng126 / MORA
  MetagenOmic read Re-Assigner and abundance quantifier
  ☆18Updated 9 months ago
• KoslickiLab / fmh-funprofiler
  A functional profiler for metagenomes using FracMinHash
  ☆20Updated 3 months ago
• metagenopolis / meteor
  Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…
  ☆24Updated this week
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆50Updated 3 years ago
• chg60 / DEPhT
  Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
  ☆21Updated 10 months ago
• leaemiliepradier / PlasForest
  A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
  ☆19Updated 2 years ago
• LaborBerlin / score-assemblies
  Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).
  ☆26Updated last year