Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights
☆17Nov 24, 2025Updated 11 months ago
Alternatives and similar repositories for Protologger
Users that are interested in Protologger are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository releases the model weights of ANNA16, an end-to-end tool that predicts 16S rRNA gene copy number (GCN) from 16S rRNA sequ…☆12Updated this week
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆29Aug 3, 2026Updated 2 months ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- Protal is tool for taxonomic profiling from whole-genome shotgun sequencing data. With GTDB marker genes as reference, protal is able to …☆16Aug 10, 2026Updated 2 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆66Sep 1, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 10 years ago
- A pipeline for whole genome assembly☆18Apr 21, 2022Updated 4 years ago
- A Snakemake workflow for recovery of plastid genomes from metagenomic samples☆11Nov 16, 2024Updated last year
- A synthesis of bacterial and archaeal phenotypic trait data☆38Nov 9, 2023Updated 2 years ago
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 26, 2026Updated 3 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated 2 years ago
- MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using machine lEarning Techniques☆15Updated this week
- Leviathan: Fast, memory-efficient, and scalable taxonomic and pathway profiling for (pan)genome-resolved metagenomics and metatranscripto…☆30Updated this week
- ⚡🦠🧬📇 Rapid microbial genomes-to-report pipeline☆75Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Apr 8, 2025Updated last year
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 3 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- ☆11Sep 16, 2021Updated 5 years ago
- ☆57Sep 17, 2026Updated last month
- Pilea: profiling bacterial growth dynamics from metagenomes with sketching☆13Oct 21, 2026Updated last week
- High-accuracy SNV calling for bacterial isolates using deep learning☆17Oct 15, 2026Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆73Aug 27, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bioinformatic Application for Quantification and LAbeling of VirAl taxonomy☆18Updated this week
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆22Nov 25, 2025Updated 11 months ago
- ☆19Updated this week
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆43Oct 19, 2026Updated last week
- A machine learning approach to alignment filtering☆17Jun 18, 2026Updated 4 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆197Sep 8, 2026Updated last month
- Phylogeny Enhanded Prediction of PAN-genome☆45Jul 17, 2020Updated 6 years ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 11 months ago
- Metagenome Clustering and Association Tool.☆29Sep 22, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Nov 12, 2025Updated 11 months ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆23Mar 11, 2023Updated 3 years ago
- Phage-Host Interaction Search Tool☆33Sep 10, 2026Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆48Feb 5, 2026Updated 8 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Nov 14, 2025Updated 11 months ago
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆19Jun 16, 2026Updated 4 months ago