thh32 / ProtologgerLinks
Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights
☆14Updated last year
Alternatives and similar repositories for Protologger
Users that are interested in Protologger are comparing it to the libraries listed below
Sorting:
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 10 months ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Prediction of microbial interactions in complex communities☆12Updated 9 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 8 months ago
- ☆22Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Assort phage protein sequences into phamilies using MMseqs2☆10Updated 5 months ago
- ☆21Updated 4 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 4 months ago
- A functional profiler for metagenomes using FracMinHash☆16Updated 3 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- software to identify primers that can distinguish genomes☆21Updated 4 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆19Updated 7 months ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated last year
- MAG Circularization Method☆33Updated 3 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆13Updated 10 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- Dadaist2 🟨 Highway to R☆13Updated 3 months ago
- Download assembly files from NCBI☆12Updated 2 years ago
- Metabolic scanning and annotation of Metagenomes☆10Updated 2 months ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆16Updated 6 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago