thh32 / ProtologgerLinks
Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights
☆15Updated 2 weeks ago
Alternatives and similar repositories for Protologger
Users that are interested in Protologger are comparing it to the libraries listed below
Sorting:
- Assort phage protein sequences into phamilies using MMseqs2☆11Updated 11 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- A Hierarchical Approach to Pangenomics Inference☆13Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- Neptune: Genomic Signature Discovery☆20Updated last year
- ☆28Updated this week
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- Dadaist2 🟨 Highway to R☆13Updated 9 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆14Updated last year
- MAG Circularization Method☆32Updated last month
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Resolving Species Level Classification Using Emu☆14Updated last year
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆16Updated this week
- A functional profiler for metagenomes using FracMinHash☆20Updated 4 months ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆30Updated last week
- A pipeline for whole genome assembly☆16Updated 3 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- Hybrid Assembler for Plasmids☆10Updated 3 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- A Swiss-Army-Knife for Bioinformaticians☆13Updated 3 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 3 weeks ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago