A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
☆85Sep 8, 2025Updated last year
Alternatives and similar repositories for cobra
Users that are interested in cobra are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- The viral taxonomic assignment pipeline☆47Aug 31, 2026Updated 2 months ago
- A tool to assemble high-quality phages from metagenomes.☆28Sep 10, 2026Updated last month
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆14Mar 14, 2024Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆56Jul 3, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆199Updated this week
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆236Mar 24, 2026Updated 7 months ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Aug 28, 2026Updated 2 months ago
- ☆27Jun 20, 2023Updated 3 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆343Updated this week
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated last month
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Sep 7, 2026Updated last month
- Virus Identification By iteRative ANnoTation☆209Apr 15, 2024Updated 2 years ago
- ☆39May 20, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Oct 12, 2026Updated 2 weeks ago
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆108Oct 19, 2026Updated last week
- Read alignment statistics for metagenomics☆411Updated this week
- Automated discovery and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes …☆24Updated this week
- Prophage Activity Estimator☆36May 30, 2024Updated 2 years ago
- Local version of the virus identification and analysis web server (tool set)☆122Oct 13, 2026Updated 2 weeks ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆67Apr 22, 2026Updated 6 months ago
- Variational autoencoder for metagenomic binning☆335Apr 27, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆71Sep 14, 2026Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆47Feb 17, 2023Updated 3 years ago
- Discover and annotate the virome☆64Jun 10, 2026Updated 4 months ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆226Sep 29, 2026Updated last month
- ☆65Feb 27, 2024Updated 2 years ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆186Oct 18, 2026Updated 2 weeks ago
- Systematic search of all known anti-phage systems.☆188Sep 1, 2026Updated 2 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Updated this week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆112Sep 12, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆56Oct 12, 2023Updated 3 years ago
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆34Updated this week
- ☆26Feb 7, 2022Updated 4 years ago
- Binning Virus Genomes from Metagenomes☆78Jul 13, 2022Updated 4 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆283Mar 20, 2025Updated last year
- Bioinformatics program inStrain☆193Oct 20, 2026Updated last week
- ☆20Apr 24, 2025Updated last year