quality filtering tool for long reads
☆413Sep 17, 2025Updated 11 months ago
Alternatives and similar repositories for Filtlong
Users that are interested in Filtlong are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- hybrid assembly pipeline for bacterial genomes☆651Jul 29, 2026Updated last month
- adapter trimmer for Oxford Nanopore reads☆386May 8, 2024Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆348Jul 24, 2026Updated last month
- a short-read polishing tool for long-read assemblies☆224Jul 28, 2026Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆242Dec 29, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Plotting scripts for long read sequencing data☆560Aug 18, 2026Updated last week
- Filtering and trimming of long read sequencing data☆219Jan 16, 2023Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆302May 9, 2024Updated 2 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆950Apr 3, 2026Updated 4 months ago
- Create statistic summary of an Oxford Nanopore read dataset☆137Nov 4, 2022Updated 3 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆523May 20, 2026Updated 3 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆186Mar 25, 2026Updated 5 months ago
- ☆259Aug 3, 2026Updated 3 weeks ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆235Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A genomic k-mer counter (and sequence utility) with nice features.☆186Jul 21, 2026Updated last month
- Minimal but speedy quality control for nanopore reads in Rust☆139Sep 16, 2024Updated last year
- Fast and accurately polish the genome generated by long reads.☆246Jan 9, 2025Updated last year
- An overview of all nanopack tools☆290Jun 2, 2023Updated 3 years ago
- Synteny and Rearrangement Identifier☆485Jul 1, 2026Updated last month
- De novo genome assembler for long uncorrected reads☆233Nov 15, 2023Updated 2 years ago
- Comparison of multiple long read datasets☆180Aug 3, 2026Updated 3 weeks ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Mar 15, 2021Updated 5 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool for generating consensus long-read assemblies for bacterial genomes☆238Aug 14, 2026Updated 2 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆675Jul 7, 2026Updated last month
- reference-based long read assemblies of bacterial genomes☆52Aug 9, 2021Updated 5 years ago
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 10 months ago
- a long read simulator that can imitate many types of read problems☆297Jul 24, 2026Updated last month
- k-mer based assembly evaluation☆354Jul 6, 2026Updated last month
- A tool to circularize genome assemblies☆257Apr 6, 2024Updated 2 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆229May 9, 2026Updated 3 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆125Jan 18, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A tool for Racon polishing of miniasm assemblies☆83Jul 24, 2026Updated last month
- Tandem repeat expansion detection or genotyping from long-read alignments☆169Mar 25, 2026Updated 5 months ago
- Fast and accurate de novo assembler for long reads☆406May 10, 2024Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆354Jul 27, 2026Updated last month
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆413Updated this week
- A single molecule sequence assembler for genomes large and small.☆708Jun 18, 2026Updated 2 months ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago