quality filtering tool for long reads
☆421Sep 17, 2025Updated last year
Alternatives and similar repositories for Filtlong
Users that are interested in Filtlong are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- hybrid assembly pipeline for bacterial genomes☆656Jul 29, 2026Updated 3 months ago
- adapter trimmer for Oxford Nanopore reads☆389May 8, 2024Updated 2 years ago
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆350Jul 24, 2026Updated 3 months ago
- ☆262Oct 1, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- De novo assembler for single molecule sequencing reads using repeat graphs☆954Apr 3, 2026Updated 6 months ago
- Plotting scripts for long read sequencing data☆564Oct 1, 2026Updated 3 weeks ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆243Sep 11, 2026Updated last month
- Filtering and trimming of long read sequencing data☆219Jan 16, 2023Updated 3 years ago
- Create statistic summary of an Oxford Nanopore read dataset☆140Nov 4, 2022Updated 3 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆528May 20, 2026Updated 5 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆245Dec 29, 2023Updated 2 years ago
- a long read simulator that can imitate many types of read problems☆308Jul 24, 2026Updated 3 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆303May 9, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Comparison of multiple long read datasets☆182Aug 3, 2026Updated 2 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆193Jul 21, 2026Updated 3 months ago
- De novo genome assembler for long uncorrected reads☆238Nov 15, 2023Updated 2 years ago
- Synteny and Rearrangement Identifier☆496Jul 1, 2026Updated 3 months ago
- An overview of all nanopack tools☆293Jun 2, 2023Updated 3 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆188Mar 25, 2026Updated 7 months ago
- Minimal but speedy quality control for nanopore reads in Rust☆139Sep 16, 2024Updated 2 years ago
- haplotypic duplication identification tool☆298Oct 30, 2025Updated last year
- Fast and accurately polish the genome generated by long reads.☆247Jan 9, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Nanopore data assembler☆171Mar 27, 2022Updated 4 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆244Oct 8, 2026Updated 3 weeks ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆422Updated this week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆236May 9, 2026Updated 5 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆678Jul 7, 2026Updated 3 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Mar 15, 2021Updated 5 years ago
- Long read / genome alignment software☆333Dec 16, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tandem repeat expansion detection or genotyping from long-read alignments☆174Mar 25, 2026Updated 7 months ago
- Fast and accurate de novo assembler for long reads☆407May 10, 2024Updated 2 years ago
- Randomly subsample sequencing reads or alignments☆279Oct 19, 2026Updated last week
- A genome completeness evaluation tool based on miniprot☆270Oct 7, 2026Updated 3 weeks ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆533Sep 27, 2023Updated 3 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆190Oct 1, 2026Updated 3 weeks ago
- Quality control for MinION sequencing data☆220Mar 17, 2026Updated 7 months ago