rrwick / FiltlongLinks
quality filtering tool for long reads
☆381Updated 3 months ago
Alternatives and similar repositories for Filtlong
Users that are interested in Filtlong are comparing it to the libraries listed below
Sorting:
- Pilon is an automated genome assembly improvement and variant detection tool☆373Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆338Updated 3 months ago
- Synteny and Rearrangement Identifier☆435Updated 8 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- adapter trimmer for Oxford Nanopore reads☆378Updated last year
- Filtering and trimming of long read sequencing data☆210Updated 2 years ago
- An overview of all nanopack tools☆273Updated 2 years ago
- Scan contig files against PubMLST typing schemes☆259Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆335Updated 8 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- An updated pipeline for pangenome investigation☆334Updated 9 months ago
- Fast and accurate de novo assembler for long reads☆397Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆361Updated 4 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆442Updated 2 months ago
- ☆223Updated 3 weeks ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆375Updated 3 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆399Updated 6 months ago
- Plotting scripts for long read sequencing data☆521Updated 3 weeks ago
- Eukaryotic Genome Annotation Pipeline☆371Updated 5 months ago
- Classifier for metagenomic sequences☆269Updated 6 months ago
- A tool to circularize genome assemblies☆249Updated last year
- Assembly and binning of metagenomes☆265Updated 3 weeks ago
- Bacterial ribosomal RNA predictor☆266Updated this week
- Sequence correction provided by ONT Research☆489Updated 3 weeks ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆272Updated 2 months ago
- Build a partitioned pangenome graph from microbial genomes☆290Updated 2 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆293Updated last year
- k-mer based assembly evaluation☆334Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆288Updated 2 weeks ago
- ☆270Updated 6 months ago