Sequence correction provided by ONT Research
☆508Apr 8, 2026Updated 3 weeks ago
Alternatives and similar repositories for medaka
Users that are interested in medaka are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo assembler for single molecule sequencing reads using repeat graphs☆922Apr 3, 2026Updated last month
- adapter trimmer for Oxford Nanopore reads☆387May 8, 2024Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- Plotting scripts for long read sequencing data☆549Mar 17, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆639Jul 25, 2024Updated last year
- quality filtering tool for long reads☆403Sep 17, 2025Updated 7 months ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆430Feb 20, 2026Updated 2 months ago
- Analysis components from Oxford Nanopore Research☆97Apr 9, 2026Updated 3 weeks ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,166Apr 25, 2026Updated last week
- Structural variation caller using third generation sequencing☆651Apr 2, 2026Updated last month
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆358Apr 27, 2026Updated last week
- Pilon is an automated genome assembly improvement and variant detection tool☆380Apr 10, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Oxford Nanopore's Basecaller☆822Feb 19, 2026Updated 2 months ago
- Signal-level algorithms for MinION data☆596Aug 5, 2023Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆342Sep 11, 2025Updated 7 months ago
- a short-read polishing tool for long-read assemblies☆216Sep 19, 2025Updated 7 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆285Oct 18, 2024Updated last year
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- A single molecule sequence assembler for genomes large and small.☆700Feb 24, 2026Updated 2 months ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Filtering and trimming of long read sequencing data☆217Jan 16, 2023Updated 3 years ago
- Long read / genome alignment software☆316Dec 16, 2025Updated 4 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆669Dec 3, 2022Updated 3 years ago
- Nanopore data assembler☆168Mar 27, 2022Updated 4 years ago
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- ☆248Updated this week
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆353Jul 19, 2025Updated 9 months ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆233May 4, 2023Updated 3 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆530Sep 27, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genome assembly evaluation tool☆509Nov 14, 2024Updated last year
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Aug 6, 2019Updated 6 years ago
- Variant calling tool for long-read sequencing data☆117Mar 19, 2025Updated last year
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆390Apr 22, 2026Updated last week
- Flip-flop basecaller for Oxford Nanopore reads☆99Jan 13, 2022Updated 4 years ago
- diploid SNV caller for error-prone reads☆209Apr 26, 2024Updated 2 years ago