wwood / CoverMLinks
Read alignment statistics for metagenomics
☆371Updated last month
Alternatives and similar repositories for CoverM
Users that are interested in CoverM are comparing it to the libraries listed below
Sorting:
- Rapid comparison and dereplication of genomes☆311Updated 4 months ago
- An updated pipeline for pangenome investigation☆316Updated 7 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆388Updated 3 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆351Updated 2 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆321Updated 7 months ago
- Assembly and binning of metagenomes☆248Updated last week
- Bacterial ribosomal RNA predictor☆256Updated 2 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆221Updated this week
- customizable pipeline to identify viral sequences from (meta)genomic data☆267Updated 10 months ago
- Eukaryotic Genome Annotation Pipeline☆365Updated 3 months ago
- Scan contig files against PubMLST typing schemes☆247Updated 2 years ago
- Build a partitioned pangenome graph from microbial genomes☆281Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆333Updated last month
- A complete pipeline for metagenomic analysis☆432Updated last month
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆444Updated 2 years ago
- bioBakery tools for meta'omic profiling☆286Updated 4 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆296Updated 2 weeks ago
- Fast Whole-Genome Similarity (ANI) Estimation☆431Updated 2 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆291Updated 5 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆216Updated this week
- CAMISIM: Simulating metagenomes and microbial communities☆214Updated last week
- NCBI Prokaryotic Genome Annotation Pipeline☆355Updated last week
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆237Updated 2 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆389Updated 2 weeks ago
- quality filtering tool for long reads☆366Updated 3 weeks ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆305Updated 5 months ago
- Synteny and Rearrangement Identifier☆413Updated 5 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆369Updated this week
- geNomad: Identification of mobile genetic elements☆260Updated last month
- Rapid large-scale prokaryote pan genome analysis☆355Updated 3 years ago