Alternatives and similar repositories for LongQC:

Users that are interested in LongQC are comparing it to the libraries listed below

• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆217Updated last month
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆143Updated 2 years ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 3 years ago
• wdecoster / chopper
  ☆169Updated last week
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆174Updated last month
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆101Updated 2 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆141Updated last year
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆107Updated 2 years ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆140Updated 3 months ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆198Updated 2 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆183Updated 9 months ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆203Updated 2 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆180Updated 7 months ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆202Updated 3 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆190Updated 4 months ago
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆131Updated 3 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆107Updated 8 months ago
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆121Updated 2 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆135Updated 3 years ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆202Updated 2 years ago
• epi2me-labs / wf-transcriptomes
  ☆86Updated last month
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆195Updated last year
• jtlovell / GENESPACE
  ☆198Updated 3 weeks ago
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆196Updated this week
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆274Updated 4 months ago
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆181Updated 2 months ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆141Updated last week
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆197Updated 6 months ago
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆221Updated last year