LongQC is a tool for the data quality control of the PacBio and ONT long reads.
☆182Mar 25, 2026Updated last month
Alternatives and similar repositories for LongQC
Users that are interested in LongQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- quality filtering tool for long reads☆403Sep 17, 2025Updated 7 months ago
- Plotting scripts for long read sequencing data☆549Mar 17, 2026Updated last month
- k-mer based assembly evaluation☆343Jun 28, 2024Updated last year
- Quality control tools for nanopore sequencing data☆113Oct 26, 2024Updated last year
- ☆35Aug 18, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- An overview of all nanopack tools☆290Jun 2, 2023Updated 2 years ago
- Sequence correction provided by ONT Research☆508Apr 8, 2026Updated last month
- a short-read polishing tool for long-read assemblies☆216Sep 19, 2025Updated 7 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- Long read / genome alignment software☆317Dec 16, 2025Updated 4 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆922Apr 3, 2026Updated last month
- Long read based human genomic structural variation detection with cuteSV☆286Mar 26, 2026Updated last month
- Quality control for MinION sequencing data☆218Mar 17, 2026Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Find, circularise and annotate mitogenome from PacBio assemblies☆196May 11, 2025Updated 11 months ago
- haplotypic duplication identification tool☆284Oct 30, 2025Updated 6 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated last year
- Comparison of multiple long read datasets☆172Dec 2, 2025Updated 5 months ago
- Tandem repeat genotyping with long reads☆36Sep 23, 2025Updated 7 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆415Dec 31, 2025Updated 4 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆39Jun 3, 2025Updated 11 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆285Oct 18, 2024Updated last year
- Create statistic summary of an Oxford Nanopore read dataset☆137Nov 4, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Structural variation caller using third generation sequencing☆651Apr 2, 2026Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆564Feb 14, 2024Updated 2 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆109Jul 23, 2024Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆309Mar 18, 2024Updated 2 years ago
- Jasmine: SV Merging Across Samples☆251Dec 20, 2024Updated last year
- ☆248May 1, 2026Updated last week
- A genome completeness evaluation tool based on miniprot☆239Sep 18, 2025Updated 7 months ago
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- A minimap2 frontend for PacBio native data formats☆215Mar 4, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Align proteins to genomes with splicing and frameshift☆401Jan 5, 2026Updated 4 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆166Feb 26, 2025Updated last year
- Tandem repeat expansion detection or genotyping from long-read alignments☆154Mar 25, 2026Updated last month
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆769Apr 15, 2026Updated 3 weeks ago
- Synteny and Rearrangement Identifier☆463Mar 17, 2026Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆61Oct 27, 2023Updated 2 years ago