LongQC is a tool for the data quality control of the PacBio and ONT long reads.
☆188Mar 25, 2026Updated 7 months ago
Alternatives and similar repositories for LongQC
Users that are interested in LongQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- quality filtering tool for long reads☆423Sep 17, 2025Updated last year
- Plotting scripts for long read sequencing data☆564Oct 1, 2026Updated last month
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 4 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆169Jul 15, 2026Updated 3 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆119Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Quality control tools for nanopore sequencing data☆116Oct 26, 2024Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆303May 9, 2024Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆270Oct 7, 2026Updated 3 weeks ago
- An overview of all nanopack tools☆293Jun 2, 2023Updated 3 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆528May 20, 2026Updated 5 months ago
- Long read based human genomic structural variation detection with cuteSV☆296Oct 12, 2026Updated 3 weeks ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆578Oct 1, 2026Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆244Dec 29, 2023Updated 2 years ago
- Long read / genome alignment software☆332Dec 16, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A minimap2 frontend for PacBio native data formats☆223Jul 2, 2026Updated 4 months ago
- Create statistic summary of an Oxford Nanopore read dataset☆140Nov 4, 2022Updated 4 years ago
- Jasmine: SV Merging Across Samples☆266Dec 20, 2024Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆955Apr 3, 2026Updated 7 months ago
- Fast and accurately polish the genome generated by long reads.☆247Jan 9, 2025Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆816May 31, 2026Updated 5 months ago
- ☆37Aug 18, 2024Updated 2 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆204May 11, 2025Updated last year
- haplotypic duplication identification tool☆299Oct 30, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆263Updated this week
- Structural variation caller using third generation sequencing☆686Oct 18, 2026Updated 2 weeks ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆300Feb 4, 2025Updated last year
- Structural Variant Identification Method using Long Reads☆189Jun 29, 2021Updated 5 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆190Updated this week
- Read-based phasing of genomic variants, also called haplotype assembly☆433Updated this week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated 2 years ago
- Synteny and Rearrangement Identifier☆498Jul 1, 2026Updated 4 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆268Sep 16, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Ultra-fast preprocessing and quality control for long-read sequencing data☆243Sep 11, 2026Updated last month
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 3 months ago
- Align proteins to genomes with splicing and frameshift☆427Jan 5, 2026Updated 10 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆223Jan 16, 2023Updated 3 years ago
- Quality control for MinION sequencing data☆220Mar 17, 2026Updated 7 months ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆397Updated this week