yfukasawa / LongQCLinks
LongQC is a tool for the data quality control of the PacBio and ONT long reads.
☆169Updated last year
Alternatives and similar repositories for LongQC
Users that are interested in LongQC are comparing it to the libraries listed below
Sorting:
- Fast and accurately polish the genome generated by long reads.☆226Updated 5 months ago
- ☆198Updated 2 months ago
- Research release basecalling models and configurations☆113Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- Nanopore data assembler☆156Updated 3 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- A minimap2 frontend for PacBio native data formats☆197Updated 3 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- Jasmine: SV Merging Across Samples☆216Updated 6 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆183Updated last month
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆152Updated 2 years ago
- ☆95Updated this week
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated last year
- Comparison of multiple long read datasets☆134Updated last month
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆100Updated 3 weeks ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆103Updated last month
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 8 months ago
- Filtering and trimming of long read sequencing data☆206Updated 2 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆139Updated 3 years ago
- Structural Variant Identification Method using Long Reads☆172Updated 3 years ago
- Constructing a pangenome gene graph☆190Updated 3 weeks ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated 7 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆171Updated this week
- Generate an interactive dot plot from mummer or minimap alignments☆203Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated 2 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆150Updated 4 months ago
- Python programs for processing GFF3 files☆98Updated last year
- A genome completeness evaluation tool based on miniprot☆213Updated last month
- An overview of all nanopack tools☆257Updated 2 years ago