yfukasawa / LongQCLinks
LongQC is a tool for the data quality control of the PacBio and ONT long reads.
☆173Updated last year
Alternatives and similar repositories for LongQC
Users that are interested in LongQC are comparing it to the libraries listed below
Sorting:
- ☆218Updated this week
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 3 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Ultra-fast preprocessing and quality control for long-read sequencing data☆191Updated last month
- Nanopore data assembler☆161Updated 3 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆146Updated 3 months ago
- Constructing a pangenome gene graph☆197Updated 2 months ago
- ☆218Updated 9 months ago
- Jasmine: SV Merging Across Samples☆229Updated 10 months ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 9 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆183Updated last month
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- Structural Variant Identification Method using Long Reads☆177Updated 4 years ago
- Version 5 of the CAFE phylogenetics software☆148Updated 8 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Hierarchical Alignment Format☆172Updated last month
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆195Updated last month
- Tools for plotting methylation data in various ways☆162Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆164Updated 3 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆207Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 2 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- Research release basecalling models and configurations☆115Updated 5 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated 3 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- A genome completeness evaluation tool based on miniprot☆227Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 5 months ago
- Any Way to Show Multi genomic Synteny☆209Updated 3 months ago