Alternatives and similar repositories for LongQC

Users that are interested in LongQC are comparing it to the libraries listed below

• wdecoster / chopper
  ☆229Updated last month
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆143Updated 6 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆203Updated 5 months ago
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆215Updated 4 months ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆174Updated 4 years ago
• jtlovell / GENESPACE
  ☆231Updated last year
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆165Updated 3 years ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆172Updated 4 years ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆239Updated last year
• TobyBaril / EarlGrey
  Earl Grey: A fully automated TE curation and annotation pipeline
  ☆190Updated last week
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 8 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆210Updated 2 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆188Updated last year
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆237Updated last year
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆115Updated 4 years ago
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆136Updated 4 years ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆146Updated 6 months ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆161Updated 11 months ago
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆181Updated 4 years ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆147Updated last year
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆169Updated 2 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆191Updated 8 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated last month
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆243Updated last week
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆207Updated last year
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆180Updated last month
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆168Updated 10 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆171Updated 2 years ago
• epi2me-labs / wf-human-variation
  ☆149Updated last week