Alternatives and similar repositories for LongQC

Users that are interested in LongQC are comparing it to the libraries listed below

• wdecoster / chopper
  ☆225Updated last month
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆143Updated 5 months ago
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆212Updated 4 months ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆188Updated last year
• jtlovell / GENESPACE
  ☆229Updated 11 months ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆235Updated last year
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 7 months ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆172Updated 4 years ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆163Updated 3 years ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆166Updated last month
• epi2me-labs / wf-human-variation
  ☆146Updated last month
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆203Updated 5 months ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆174Updated 4 years ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆239Updated last year
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆145Updated 6 months ago
• TobyBaril / EarlGrey
  Earl Grey: A fully automated TE curation and annotation pipeline
  ☆189Updated this week
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆179Updated 4 years ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆189Updated 8 months ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆211Updated 2 years ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆238Updated last month
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆210Updated last year
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆207Updated last month
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆207Updated 3 years ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆160Updated 10 months ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆115Updated 4 years ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆167Updated 2 years ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆208Updated last year
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆158Updated 10 months ago
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆168Updated 9 months ago