yfukasawa / LongQCLinks
LongQC is a tool for the data quality control of the PacBio and ONT long reads.
☆178Updated 2 years ago
Alternatives and similar repositories for LongQC
Users that are interested in LongQC are comparing it to the libraries listed below
Sorting:
- ☆224Updated 3 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 5 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆212Updated 3 months ago
- Research release basecalling models and configurations☆117Updated 7 months ago
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- ☆228Updated 11 months ago
- Jasmine: SV Merging Across Samples☆235Updated last year
- Nanopore data assembler☆162Updated 3 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆189Updated last week
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- Constructing a pangenome gene graph☆203Updated 4 months ago
- Structural Variant Identification Method using Long Reads☆179Updated 4 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆145Updated 5 months ago
- ☆146Updated last month
- Filtering and trimming of long read sequencing data☆210Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 10 months ago
- Tools for plotting methylation data in various ways☆166Updated last month
- Hierarchical Alignment Format☆174Updated 3 weeks ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆197Updated 3 months ago
- Version 5 of the CAFE phylogenetics software☆158Updated 10 months ago
- A minimap2 frontend for PacBio native data formats☆207Updated last month
- A bioinformatics tool for working with modified bases☆238Updated last month
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆166Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Updated 3 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆156Updated 5 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago