schneebergerlab / plotsrLinks
Tool to plot synteny and structural rearrangements between genomes
☆332Updated 8 months ago
Alternatives and similar repositories for plotsr
Users that are interested in plotsr are comparing it to the libraries listed below
Sorting:
- ☆222Updated 10 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆283Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆335Updated 2 months ago
- ☆220Updated this week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- quality filtering tool for long reads☆380Updated 2 months ago
- Eukaryotic Genome Annotation Pipeline☆368Updated 5 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Synteny and Rearrangement Identifier☆428Updated 7 months ago
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 10 months ago
- Any Way to Show Multi genomic Synteny☆211Updated 5 months ago
- An overview of all nanopack tools☆272Updated 2 years ago
- Filtering and trimming of long read sequencing data☆209Updated 2 years ago
- ☆270Updated 5 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 4 months ago
- 3D de novo assembly (3D DNA) pipeline☆219Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆374Updated this week
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆270Updated 2 months ago
- k-mer based assembly evaluation☆333Updated last year
- A tool to circularize genome assemblies☆249Updated last year
- Genome Assembly and Annotation Service code☆216Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆177Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- Earl Grey: A fully automated TE curation and annotation pipeline☆187Updated last week
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Bacterial ribosomal RNA predictor☆262Updated this week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆358Updated 4 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆323Updated 2 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 5 months ago