Tool to plot synteny and structural rearrangements between genomes
☆354Jul 27, 2026Updated last month
Alternatives and similar repositories for plotsr
Users that are interested in plotsr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Synteny and Rearrangement Identifier☆485Jul 1, 2026Updated 2 months ago
- An accurate GFF3/GTF lift over pipeline☆551Aug 1, 2023Updated 3 years ago
- k-mer based assembly evaluation☆353Jul 6, 2026Updated last month
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆413Aug 25, 2026Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Identify and find telomeres, or telomeric repeats in a genome.☆175Nov 24, 2025Updated 9 months ago
- ☆261Jan 24, 2025Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 4 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆703Updated this week
- A grammar of graphics for comparative genomics☆779Updated this week
- A genome completeness evaluation tool based on miniprot☆262Aug 17, 2026Updated 2 weeks ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆110Dec 11, 2023Updated 2 years ago
- the pangenome graph builder☆514Jul 24, 2026Updated last month
- Version 5 of the CAFE phylogenetics software☆177Mar 16, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆211Nov 23, 2025Updated 9 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆299May 28, 2026Updated 3 months ago
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 10 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆220Jan 17, 2024Updated 2 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆928Aug 12, 2026Updated 3 weeks ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- Extensive de-novo TE Annotator☆470Updated this week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆182Jun 23, 2026Updated 2 months ago
- Sequence-to-graph mapper and graph generator☆487Aug 11, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Any Way to Show Multi genomic Synteny☆230Jul 4, 2025Updated last year
- Structural Variant Identification Method using Genome Assemblies☆147Sep 16, 2022Updated 3 years ago
- Yet another k-mer analyzer☆174Dec 30, 2025Updated 8 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆808May 31, 2026Updated 3 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆200May 11, 2025Updated last year
- Neural network classification of TE☆102Apr 3, 2026Updated 4 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆245Sep 6, 2024Updated last year
- Gene cluster comparison figure generator☆653Dec 22, 2025Updated 8 months ago
- oxford dot plots☆174Aug 20, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆469Jun 17, 2026Updated 2 months ago
- Toolset for SV simulation, comparison and filtering☆425Dec 1, 2023Updated 2 years ago
- ☆198Feb 10, 2026Updated 6 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆271Updated this week
- Pipeline to convert a haploid assembly into diploid☆113Jan 23, 2025Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year