Alternatives and similar repositories for plotsr

Users that are interested in plotsr are comparing it to the libraries listed below

• jtlovell / GENESPACE
  ☆218Updated 9 months ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆333Updated last month
• wdecoster / chopper
  ☆216Updated last month
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆416Updated 6 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆373Updated last month
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆242Updated 4 years ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆276Updated last month
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆208Updated 2 years ago
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆270Updated 3 weeks ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆142Updated 3 months ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆282Updated 8 months ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆234Updated 9 months ago
• alekseyzimin / masurca
  ☆267Updated 4 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆283Updated last year
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆216Updated last year
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆271Updated 2 years ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆366Updated 3 months ago
• marbl / merqury
  k-mer based assembly evaluation
  ☆331Updated last year
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆220Updated last month
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆191Updated last month
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆210Updated last year
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆173Updated last year
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆209Updated 3 months ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆354Updated 2 months ago
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆218Updated last year
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆365Updated last month
• TobyBaril / EarlGrey
  Earl Grey: A fully automated TE curation and annotation pipeline
  ☆183Updated last month
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆369Updated 3 years ago
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆195Updated last month
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆206Updated last year