schneebergerlab / plotsr
Tool to plot synteny and structural rearrangements between genomes
☆300Updated this week
Alternatives and similar repositories for plotsr:
Users that are interested in plotsr are comparing it to the libraries listed below
- ☆204Updated 2 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆137Updated 3 years ago
- Fast and accurately polish the genome generated by long reads.☆220Updated 3 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆210Updated this week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆247Updated last month
- ☆183Updated 2 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆199Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆318Updated 10 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆143Updated this week
- Earl Grey: A fully automated TE curation and annotation pipeline☆165Updated this week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆226Updated 4 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆268Updated 2 months ago
- A bioinformatics tool for working with modified bases☆183Updated this week
- Any Way to Show Multi genomic Synteny☆179Updated this week
- Synteny and Rearrangement Identifier☆374Updated 2 weeks ago
- Genome Assembly and Annotation Service code☆211Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆147Updated 2 years ago
- quality filtering tool for long reads☆326Updated last year
- An updated pipeline for pangenome investigation☆294Updated last month
- 3D de novo assembly (3D DNA) pipeline☆208Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆199Updated 7 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆217Updated last week
- De-Novo Repeat Discovery Tool☆208Updated 3 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago
- Filtering and trimming of long read sequencing data☆201Updated 2 years ago
- Genome browser and variant annotation☆300Updated last week
- Pan-genome wide association studies☆193Updated 10 months ago
- snipit: summarise snps relative to your reference sequence☆157Updated 2 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆125Updated 4 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 4 years ago