Tool to plot synteny and structural rearrangements between genomes
☆349Apr 7, 2025Updated last year
Alternatives and similar repositories for plotsr
Users that are interested in plotsr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Synteny and Rearrangement Identifier☆480Jul 1, 2026Updated 3 weeks ago
- An accurate GFF3/GTF lift over pipeline☆547Aug 1, 2023Updated 2 years ago
- k-mer based assembly evaluation☆351Jul 6, 2026Updated 2 weeks ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆404Apr 22, 2026Updated 3 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆571Feb 14, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Identify and find telomeres, or telomeric repeats in a genome.☆171Nov 24, 2025Updated 8 months ago
- ☆251Jan 24, 2025Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆150Apr 13, 2026Updated 3 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆697Updated this week
- A grammar of graphics for comparative genomics☆774Jul 3, 2026Updated 3 weeks ago
- A genome completeness evaluation tool based on miniprot☆254Updated this week
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- the pangenome graph builder☆507Updated this week
- Version 5 of the CAFE phylogenetics software☆173Mar 16, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆209Nov 23, 2025Updated 8 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆297May 28, 2026Updated last month
- haplotypic duplication identification tool☆291Oct 30, 2025Updated 8 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆924Updated this week
- Extensive de-novo TE Annotator☆463Jul 16, 2026Updated last week
- base-accurate DNA sequence alignments using WFA and mashmap3☆220Jun 21, 2026Updated last month
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆179Jun 23, 2026Updated last month
- Sequence-to-graph mapper and graph generator☆483Aug 11, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Any Way to Show Multi genomic Synteny☆231Jul 4, 2025Updated last year
- Structural Variant Identification Method using Genome Assemblies☆145Sep 16, 2022Updated 3 years ago
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 6 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆790May 31, 2026Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆199May 11, 2025Updated last year
- Neural network classification of TE☆100Apr 3, 2026Updated 3 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆243Sep 6, 2024Updated last year
- Gene cluster comparison figure generator☆651Dec 22, 2025Updated 7 months ago
- oxford dot plots☆173Jul 2, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆465Jun 17, 2026Updated last month
- Toolset for SV simulation, comparison and filtering☆424Dec 1, 2023Updated 2 years ago
- ☆196Feb 10, 2026Updated 5 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆268Updated this week
- Pipeline to convert a haploid assembly into diploid☆112Jan 23, 2025Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Constructing a pangenome gene graph☆209Aug 11, 2025Updated 11 months ago