schneebergerlab / plotsr
Tool to plot synteny and structural rearrangements between genomes
☆299Updated 3 weeks ago
Alternatives and similar repositories for plotsr:
Users that are interested in plotsr are comparing it to the libraries listed below
- ☆199Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆136Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆316Updated 9 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆247Updated 4 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆197Updated last year
- ☆178Updated 3 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆207Updated 2 weeks ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆221Updated 4 years ago
- Fast and accurately polish the genome generated by long reads.☆218Updated 2 months ago
- Synteny and Rearrangement Identifier☆367Updated 2 weeks ago
- 3D de novo assembly (3D DNA) pipeline☆207Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆266Updated last month
- Any Way to Show Multi genomic Synteny☆176Updated 4 months ago
- A bioinformatics tool for working with modified bases☆174Updated last week
- Genome Assembly and Annotation Service code☆209Updated last year
- snipit: summarise snps relative to your reference sequence☆155Updated last month
- BSR-Based Allele Calling Algorithm☆140Updated this week
- Pilon is an automated genome assembly improvement and variant detection tool☆353Updated 2 years ago
- quality filtering tool for long reads☆322Updated last year
- Scan contig files against PubMLST typing schemes☆218Updated 2 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆143Updated last year
- Earl Grey: A fully automated TE curation and annotation pipeline☆159Updated last month
- Eukaryotic Genome Annotation Pipeline☆337Updated this week
- An updated pipeline for pangenome investigation☆285Updated last week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 4 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 3 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆159Updated last year
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆117Updated 2 months ago
- Convert various sequence formats to FASTA☆130Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆197Updated 6 months ago