schneebergerlab / plotsrLinks
Tool to plot synteny and structural rearrangements between genomes
☆335Updated 8 months ago
Alternatives and similar repositories for plotsr
Users that are interested in plotsr are comparing it to the libraries listed below
Sorting:
- ☆228Updated 11 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆338Updated 3 months ago
- ☆223Updated 3 weeks ago
- quality filtering tool for long reads☆381Updated 3 months ago
- Synteny and Rearrangement Identifier☆435Updated 8 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Filtering and trimming of long read sequencing data☆210Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 10 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆288Updated 2 weeks ago
- 3D de novo assembly (3D DNA) pipeline☆220Updated 2 years ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆272Updated 2 months ago
- Genome Assembly and Annotation Service code☆217Updated 2 years ago
- ☆270Updated 6 months ago
- An overview of all nanopack tools☆273Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline☆371Updated 5 months ago
- An updated pipeline for pangenome investigation☆334Updated 9 months ago
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆375Updated 2 weeks ago
- Any Way to Show Multi genomic Synteny☆215Updated 5 months ago
- A tool to circularize genome assemblies☆249Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆373Updated 3 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆189Updated last week
- A bioinformatics tool for working with modified bases☆238Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 5 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆193Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆289Updated 3 weeks ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆216Updated 6 months ago
- Bacterial ribosomal RNA predictor☆266Updated this week