hybrid assembly pipeline for bacterial genomes
☆636Jul 25, 2024Updated last year
Alternatives and similar repositories for Unicycler
Users that are interested in Unicycler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆341Sep 11, 2025Updated 7 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆669Dec 3, 2022Updated 3 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆915Apr 3, 2026Updated last week
- quality filtering tool for long reads☆398Sep 17, 2025Updated 6 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆622Feb 18, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rapid haploid variant calling and core genome alignment☆576Dec 12, 2025Updated 4 months ago
- Rapid prokaryotic genome annotation☆971Jan 6, 2026Updated 3 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆486Apr 3, 2026Updated last week
- Pilon is an automated genome assembly improvement and variant detection tool☆380Apr 10, 2022Updated 4 years ago
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated 2 years ago
- a short-read polishing tool for long-read assemblies☆211Sep 19, 2025Updated 6 months ago
- SPAdes Genome Assembler☆925Mar 17, 2026Updated 3 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆406Mar 2, 2026Updated last month
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆258Dec 13, 2025Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Sequence correction provided by ONT Research☆504Updated this week
- adapter trimmer for Oxford Nanopore reads☆386May 8, 2024Updated last year
- Fast genome and metagenome distance estimation using MinHash☆438Sep 19, 2025Updated 6 months ago
- An updated pipeline for pangenome investigation☆353Jan 15, 2026Updated 3 months ago
- Rapid large-scale prokaryote pan genome analysis☆375Nov 3, 2025Updated 5 months ago
- A single molecule sequence assembler for genomes large and small.☆699Feb 24, 2026Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆588Updated this week
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆359Mar 29, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- NCBI Prokaryotic Genome Annotation Pipeline☆375Feb 9, 2026Updated 2 months ago
- Mummer alignment tool☆554Feb 4, 2025Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆454Dec 16, 2025Updated 3 months ago
- SKESA assembler☆126Oct 11, 2024Updated last year
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆354Jul 19, 2025Updated 8 months ago
- ☆273Jun 26, 2025Updated 9 months ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆216Aug 27, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆173Apr 16, 2025Updated 11 months ago
- Scripts to download genomes from the NCBI FTP servers☆1,071Apr 7, 2026Updated last week
- Genome assembly evaluation tool☆508Nov 14, 2024Updated last year
- "Reads to report" for public health and clinical microbiology☆142Dec 9, 2025Updated 4 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆502Updated this week
- Software for prediction of plasmid sequences in metagenomic assemblies☆110Jun 28, 2021Updated 4 years ago
- Scan contig files against PubMLST typing schemes☆271Mar 26, 2026Updated 2 weeks ago