rrwick / UnicyclerLinks
hybrid assembly pipeline for bacterial genomes
☆612Updated last year
Alternatives and similar repositories for Unicycler
Users that are interested in Unicycler are comparing it to the libraries listed below
Sorting:
- Genome assembly evaluation tool☆464Updated 10 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆435Updated last year
- Sequence correction provided by ONT Research☆482Updated last month
- Plotting scripts for long read sequencing data☆502Updated 3 weeks ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆868Updated 4 months ago
- Mummer alignment tool☆524Updated 7 months ago
- Rapid haploid variant calling and core genome alignment☆542Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆441Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆528Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆550Updated 3 weeks ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆423Updated 7 months ago
- Eukaryotic Genome Annotation Pipeline☆361Updated 2 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆354Updated 2 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆384Updated 3 months ago
- adapter trimmer for Oxford Nanopore reads☆371Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆384Updated this week
- Pilon is an automated genome assembly improvement and variant detection tool☆368Updated 3 years ago
- A complete pipeline for metagenomic analysis☆428Updated 2 weeks ago
- Gene cluster comparison figure generator☆608Updated 9 months ago
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆679Updated 6 months ago
- quality filtering tool for long reads☆365Updated this week
- A single molecule sequence assembler for genomes large and small.☆689Updated 2 weeks ago
- Fast Whole-Genome Similarity (ANI) Estimation☆427Updated last month
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆633Updated 2 years ago
- The second version of the Kraken taxonomic sequence classification system☆823Updated 2 weeks ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆350Updated last month
- Fast genome-wide functional annotation through orthology assignment☆649Updated 3 months ago
- 🌈 Interactive analysis of metagenomics data☆423Updated last month
- A flexible pipeline for complete analysis of bacterial genomes☆472Updated last week