hybrid assembly pipeline for bacterial genomes
☆645Jul 25, 2024Updated last year
Alternatives and similar repositories for Unicycler
Users that are interested in Unicycler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆344Sep 11, 2025Updated 9 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆672Dec 3, 2022Updated 3 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆941Apr 3, 2026Updated 3 months ago
- quality filtering tool for long reads☆404Sep 17, 2025Updated 9 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆656May 15, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rapid haploid variant calling and core genome alignment☆588Dec 12, 2025Updated 6 months ago
- Rapid prokaryotic genome annotation☆985Jan 6, 2026Updated 5 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆497Apr 3, 2026Updated 3 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆382Apr 10, 2022Updated 4 years ago
- A tool to circularize genome assemblies☆257Apr 6, 2024Updated 2 years ago
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 9 months ago
- SPAdes Genome Assembler☆947Jun 16, 2026Updated 2 weeks ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆260Jun 11, 2026Updated 3 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆410Mar 2, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Sequence correction provided by ONT Research☆516May 20, 2026Updated last month
- adapter trimmer for Oxford Nanopore reads☆384May 8, 2024Updated 2 years ago
- Fast genome and metagenome distance estimation using MinHash☆445Sep 19, 2025Updated 9 months ago
- An updated pipeline for pangenome investigation☆361Jun 2, 2026Updated last month
- Rapid large-scale prokaryote pan genome analysis☆378Nov 3, 2025Updated 8 months ago
- A single molecule sequence assembler for genomes large and small.☆701Jun 18, 2026Updated 2 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆298May 9, 2024Updated 2 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆609May 20, 2026Updated last month
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆371Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- NCBI Prokaryotic Genome Annotation Pipeline☆379Jun 2, 2026Updated last month
- Mummer alignment tool☆564Feb 4, 2025Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆468Dec 16, 2025Updated 6 months ago
- SKESA assembler☆126Oct 11, 2024Updated last year
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆355Jul 19, 2025Updated 11 months ago
- ☆277Jun 26, 2025Updated last year
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆221Aug 27, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆177Apr 16, 2025Updated last year
- Scripts to download genomes from the NCBI FTP servers☆1,079Apr 7, 2026Updated 2 months ago
- Genome assembly evaluation tool☆515Jun 10, 2026Updated 3 weeks ago
- "Reads to report" for public health and clinical microbiology☆144Dec 9, 2025Updated 6 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆519May 21, 2026Updated last month
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- Scan contig files against PubMLST typing schemes☆288Jun 17, 2026Updated 2 weeks ago