adapter trimmer for Oxford Nanopore reads
☆385May 8, 2024Updated 2 years ago
Alternatives and similar repositories for Porechop
Users that are interested in Porechop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- quality filtering tool for long reads☆406Sep 17, 2025Updated 10 months ago
- Sequence correction provided by ONT Research☆517May 20, 2026Updated 2 months ago
- Quality control for MinION sequencing data☆220Mar 17, 2026Updated 4 months ago
- Plotting scripts for long read sequencing data☆558Jun 15, 2026Updated last month
- Signal-level algorithms for MinION data☆599Aug 5, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- a signal-level demultiplexer for Oxford Nanopore reads☆125Jan 18, 2021Updated 5 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆299May 9, 2024Updated 2 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆287Oct 18, 2024Updated last year
- Filtering and trimming of long read sequencing data☆218Jan 16, 2023Updated 3 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆944Apr 3, 2026Updated 3 months ago
- hybrid assembly pipeline for bacterial genomes☆648Jul 7, 2026Updated 2 weeks ago
- ☆257Jul 1, 2026Updated 2 weeks ago
- An overview of all nanopack tools☆290Jun 2, 2023Updated 3 years ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆672Jul 7, 2026Updated 2 weeks ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,219May 19, 2026Updated 2 months ago
- A single molecule sequence assembler for genomes large and small.☆702Jun 18, 2026Updated last month
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆79Dec 15, 2020Updated 5 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 10 months ago
- Analysis components from Oxford Nanopore Research☆98Jul 1, 2026Updated 2 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆383Apr 10, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆241Dec 29, 2023Updated 2 years ago
- a toolkit for working with Oxford nanopore data☆242Feb 6, 2023Updated 3 years ago
- Structural variation caller using third generation sequencing☆672Updated this week
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆233May 4, 2023Updated 3 years ago
- A tool to circularize genome assemblies☆257Apr 6, 2024Updated 2 years ago
- Classifier for metagenomic sequences☆278Apr 15, 2026Updated 3 months ago
- Oxford Nanopore's Basecaller☆852Jul 13, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated last year
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆356Jul 19, 2025Updated last year
- The second version of the Kraken taxonomic sequence classification system☆926Jul 9, 2026Updated last week
- Genome assembly evaluation tool☆518Jun 10, 2026Updated last month
- SV caller for nanopore data☆92Jun 7, 2020Updated 6 years ago