rrwick / PorechopLinks
adapter trimmer for Oxford Nanopore reads
☆361Updated last year
Alternatives and similar repositories for Porechop
Users that are interested in Porechop are comparing it to the libraries listed below
Sorting:
- Tools for fast and flexible genome assembly scaffolding and improvement☆508Updated last year
- Sequence correction provided by ONT Research☆458Updated last week
- Pilon is an automated genome assembly improvement and variant detection tool☆363Updated 3 years ago
- TransDecoder source☆289Updated 8 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆230Updated 4 years ago
- Eukaryotic Genome Annotation Pipeline☆351Updated last week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆409Updated 4 months ago
- quality filtering tool for long reads☆339Updated last year
- Fast and accurate de novo assembler for long reads☆387Updated last year
- Plotting scripts for long read sequencing data☆476Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆321Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆340Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆301Updated last year
- Structural variation caller using third generation sequencing☆593Updated last month
- Classifier for metagenomic sequences☆260Updated 7 months ago
- An accurate GFF3/GTF lift over pipeline☆482Updated last year
- Synteny and Rearrangement Identifier☆386Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆306Updated last month
- Genome assembly evaluation tool☆439Updated 6 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆341Updated this week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆256Updated 3 weeks ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆308Updated 3 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆254Updated 5 months ago
- Filtering and trimming of long read sequencing data☆205Updated 2 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆370Updated 9 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆626Updated 2 months ago
- A bioinformatics tool for working with modified bases☆191Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆514Updated 2 months ago
- the pangenome graph builder☆433Updated this week