adapter trimmer for Oxford Nanopore reads
☆385May 8, 2024Updated last year
Alternatives and similar repositories for Porechop
Users that are interested in Porechop are comparing it to the libraries listed below
Sorting:
- quality filtering tool for long reads☆395Sep 17, 2025Updated 6 months ago
- Sequence correction provided by ONT Research☆501Dec 8, 2025Updated 3 months ago
- Quality control for MinION sequencing data☆217Updated this week
- Plotting scripts for long read sequencing data☆536Updated this week
- Signal-level algorithms for MinION data☆594Aug 5, 2023Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated last year
- a signal-level demultiplexer for Oxford Nanopore reads☆126Jan 18, 2021Updated 5 years ago
- Filtering and trimming of long read sequencing data☆214Jan 16, 2023Updated 3 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆909May 2, 2025Updated 10 months ago
- hybrid assembly pipeline for bacterial genomes☆634Jul 25, 2024Updated last year
- ☆242Mar 2, 2026Updated 2 weeks ago
- An overview of all nanopack tools☆283Jun 2, 2023Updated 2 years ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 6 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆667Dec 3, 2022Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,143Feb 13, 2026Updated last month
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆79Dec 15, 2020Updated 5 years ago
- A single molecule sequence assembler for genomes large and small.☆699Feb 24, 2026Updated 3 weeks ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- a short-read polishing tool for long-read assemblies☆211Sep 19, 2025Updated 6 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆308Mar 18, 2024Updated 2 years ago
- Analysis components from Oxford Nanopore Research☆97Sep 4, 2024Updated last year
- Fast and accurately polish the genome generated by long reads.☆240Jan 9, 2025Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆378Apr 10, 2022Updated 3 years ago
- Structural variation caller using third generation sequencing☆639Mar 10, 2026Updated last week
- a toolkit for working with Oxford nanopore data☆242Feb 6, 2023Updated 3 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 2 years ago
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated last year
- Classifier for metagenomic sequences☆271Jun 20, 2025Updated 9 months ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234May 4, 2023Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Oxford Nanopore's Basecaller☆806Feb 19, 2026Updated last month
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆354Jul 19, 2025Updated 8 months ago
- High-quality Nanopore-only genome polisher☆69Aug 16, 2024Updated last year
- The second version of the Kraken taxonomic sequence classification system☆879Mar 10, 2026Updated last week
- Genome assembly evaluation tool☆507Nov 14, 2024Updated last year
- SV caller for nanopore data☆92Jun 7, 2020Updated 5 years ago