rrwick / PorechopLinks
adapter trimmer for Oxford Nanopore reads
☆365Updated last year
Alternatives and similar repositories for Porechop
Users that are interested in Porechop are comparing it to the libraries listed below
Sorting:
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- Eukaryotic Genome Annotation Pipeline☆356Updated last week
- Sequence correction provided by ONT Research☆465Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆416Updated 5 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆235Updated 4 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆376Updated last month
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆345Updated last year
- Genome assembly evaluation tool☆445Updated 8 months ago
- Synteny and Rearrangement Identifier☆396Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆516Updated last year
- Fast and accurate de novo assembler for long reads☆388Updated last year
- quality filtering tool for long reads☆351Updated last year
- An accurate GFF3/GTF lift over pipeline☆490Updated last year
- Mummer alignment tool☆518Updated 5 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆325Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆352Updated 2 weeks ago
- Plotting scripts for long read sequencing data☆486Updated 2 months ago
- ☆256Updated last year
- the pangenome graph builder☆439Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆311Updated 3 months ago
- Extensive de-novo TE Annotator☆392Updated 2 weeks ago
- TransDecoder source☆292Updated 9 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆342Updated last month
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆304Updated last year
- Structural variation caller using third generation sequencing☆603Updated this week
- Scan contig files against PubMLST typing schemes☆238Updated 2 years ago
- Classifier for metagenomic sequences☆261Updated 3 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆430Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆285Updated last year