rrwick / Long-read-assembler-comparisonLinks
Benchmarking of long-read assembly tools for bacterial whole genomes
☆173Updated 4 years ago
Alternatives and similar repositories for Long-read-assembler-comparison
Users that are interested in Long-read-assembler-comparison are comparing it to the libraries listed below
Sorting:
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated last month
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- Long-read mock community experiments☆106Updated 3 years ago
- ☆208Updated 3 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- Nanopore data assembler☆160Updated 3 years ago
- Get assembly statistics from FASTA and FASTQ files☆122Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆204Updated last year
- ☆216Updated 7 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆174Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆209Updated last year
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Version 5 of the CAFE phylogenetics software☆142Updated 6 months ago
- Constructing a pangenome gene graph☆195Updated 2 weeks ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆127Updated 9 months ago
- Read Until client library for Nanopore Sequencing☆104Updated 11 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆206Updated 2 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆97Updated last year
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- Research release basecalling models and configurations☆115Updated 3 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆145Updated last month
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated last month
- ☆78Updated 4 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆140Updated last year
- A genome completeness evaluation tool based on miniprot☆217Updated 3 months ago
- The ARTIC field bioinformatics pipeline☆125Updated last month
- Foreign Contamination Screening caller scripts and documentation