rrwick / Long-read-assembler-comparisonLinks
Benchmarking of long-read assembly tools for bacterial whole genomes
☆171Updated 4 years ago
Alternatives and similar repositories for Long-read-assembler-comparison
Users that are interested in Long-read-assembler-comparison are comparing it to the libraries listed below
Sorting:
- ☆211Updated 5 months ago
- ☆198Updated 2 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆203Updated last year
- Ultra-fast preprocessing and quality control for long-read sequencing data☆149Updated 3 weeks ago
- Fast and accurately polish the genome generated by long reads.☆226Updated 5 months ago
- Long-read mock community experiments☆105Updated 3 years ago
- Nanopore data assembler☆156Updated 3 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆169Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆144Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆308Updated 2 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆139Updated 3 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- Read Until client library for Nanopore Sequencing☆104Updated 9 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆150Updated 4 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated last year
- Research release basecalling models and configurations☆113Updated last month
- Get assembly statistics from FASTA and FASTQ files☆121Updated 2 years ago
- A minimap2 frontend for PacBio native data formats☆197Updated 4 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆154Updated last week
- Version 5 of the CAFE phylogenetics software☆134Updated 4 months ago
- ☆78Updated 4 years ago
- ☆126Updated 2 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆137Updated 2 weeks ago
- OPERA-MS - Hybrid Metagenomic Assembler☆95Updated 11 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆171Updated this week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆152Updated 4 months ago
- Filtering and trimming of long read sequencing data☆206Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 10 months ago