Benchmarking of long-read assembly tools for bacterial whole genomes
☆170Mar 15, 2021Updated 5 years ago
Alternatives and similar repositories for Long-read-assembler-comparison
Users that are interested in Long-read-assembler-comparison are comparing it to the libraries listed below
Sorting:
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Aug 6, 2019Updated 6 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆341Sep 11, 2025Updated 6 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- A tool for Racon polishing of miniasm assemblies☆80Mar 2, 2026Updated 2 weeks ago
- quality filtering tool for long reads☆395Sep 17, 2025Updated 6 months ago
- a long read simulator that can imitate many types of read problems☆273Jul 22, 2024Updated last year
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆51Aug 9, 2021Updated 4 years ago
- a collection of scripts for organising bacterial genomes by species☆81Mar 18, 2022Updated 4 years ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 6 years ago
- hybrid assembly pipeline for bacterial genomes☆634Jul 25, 2024Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆909May 2, 2025Updated 10 months ago
- ✏️ Genome assembly polishing & SNV detection☆73Mar 10, 2026Updated last week
- Fast genome and metagenome distance estimation using MinHash☆436Sep 19, 2025Updated 6 months ago
- A tool for removing redundant genomes from a set of assemblies☆79Sep 10, 2025Updated 6 months ago
- High-quality Nanopore-only genome polisher☆69Aug 16, 2024Updated last year
- Chromosome-level scaffolding using multiple references☆165Sep 8, 2024Updated last year
- a short-read polishing tool for long-read assemblies☆211Sep 19, 2025Updated 6 months ago
- Long-read mock community experiments☆104Oct 8, 2021Updated 4 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- Sequence correction provided by ONT Research☆501Dec 8, 2025Updated 3 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆238Dec 29, 2023Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆80Sep 20, 2023Updated 2 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Long read / genome alignment software☆310Dec 16, 2025Updated 3 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 2 months ago
- Yet Another Chimeric Read Detector☆85Nov 7, 2024Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆667Dec 3, 2022Updated 3 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28May 9, 2024Updated last year
- An algorithm for recovering haplotypes from metagenomes☆30Jun 29, 2021Updated 4 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Aug 30, 2022Updated 3 years ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Nov 24, 2025Updated 3 months ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 5 years ago
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated last year
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆54Feb 6, 2024Updated 2 years ago
- An accurate and ultra-fast hybrid genome assembler☆87Apr 10, 2024Updated last year