GaetanBenoitDev / metaMDBG
MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
☆153Updated 5 months ago
Alternatives and similar repositories for metaMDBG
Users that are interested in metaMDBG are comparing it to the libraries listed below
Sorting:
- a short-read polishing tool for long-read assemblies☆159Updated 11 months ago
- A genome completeness evaluation tool based on miniprot☆211Updated last week
- Metagenomic classification of long-read sequencing data☆83Updated last week
- Foreign Contamination Screening caller scripts and documentation☆129Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆127Updated last week
- Nanopore data assembler☆151Updated 3 years ago
- ☆189Updated 3 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆126Updated this week
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆142Updated 3 months ago
- Comparison of multiple long read datasets☆129Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆181Updated this week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆119Updated last year
- Interactive quality assessment of genome assemblies☆99Updated last week
- A genomic k-mer counter (and sequence utility) with nice features.☆136Updated 2 months ago
- Create a tree using Mash distances☆164Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆131Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆196Updated 10 months ago
- Create statistic summary of an Oxford Nanopore read dataset☆112Updated 2 years ago
- ☆145Updated this week
- Reorients assembled microbial sequences☆116Updated last month
- High-precision TE Annotator☆117Updated 2 weeks ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆149Updated last month
- Evaluation and polishing workflows for T2T genome assemblies☆129Updated 6 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆103Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆102Updated last month
- Constructing a pangenome gene graph☆186Updated last month
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆94Updated last month
- DDBJ Fast Annotation and Submission Tool☆80Updated 2 weeks ago
- A fast whole-genome aligner based on de Bruijn graphs☆146Updated 3 months ago
- a tool for inferring species tree from sequencing reads☆149Updated 2 months ago