Alternatives and similar repositories for metaMDBG:

Users that are interested in metaMDBG are comparing it to the libraries listed below

• rrwick / Polypolish
  a short-read polishing tool for long-read assemblies
  ☆156Updated 9 months ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆77Updated 2 weeks ago
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆113Updated this week
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆121Updated 3 weeks ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆203Updated 3 weeks ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆129Updated 2 weeks ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆116Updated last year
• lskatz / mashtree
  Create a tree using Mash distances
  ☆159Updated last year
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆98Updated this week
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆115Updated last week
• CDCgov / mycosnp-nf
  CDCgov/mycosnp-nf
  ☆49Updated this week
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆105Updated 3 weeks ago
• Gaius-Augustus / GALBA
  GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…
  ☆140Updated 2 months ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆86Updated 8 months ago
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆91Updated last year
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆123Updated this week
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆93Updated last month
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆144Updated last month
• wwood / singlem
  Novelty-inclusive microbial community profiling of shotgun metagenomes
  ☆140Updated last week
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆114Updated 10 months ago
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆71Updated last month
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆191Updated 8 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆100Updated 11 months ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆62Updated 6 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆148Updated 3 years ago
• marbl / ModDotPlot
  ☆142Updated this week
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆75Updated 6 months ago
• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆122Updated 5 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆177Updated 3 weeks ago
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆163Updated 2 weeks ago