GaetanBenoitDev / metaMDBGLinks
MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
☆190Updated last week
Alternatives and similar repositories for metaMDBG
Users that are interested in metaMDBG are comparing it to the libraries listed below
Sorting:
- A genome completeness evaluation tool based on miniprot☆233Updated 4 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆210Updated 2 weeks ago
- Foreign Contamination Screening caller scripts and documentation☆156Updated 10 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated 3 weeks ago
- ☆229Updated last month
- Ultra-fast preprocessing and quality control for long-read sequencing data☆215Updated 4 months ago
- Metagenomic classification of long-read sequencing data☆99Updated last week
- A fast whole-genome aligner based on de Bruijn graphs☆157Updated 6 months ago
- Interactive quality assessment of genome assemblies☆117Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆233Updated 3 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆191Updated 8 months ago
- Nanopore data assembler☆164Updated 3 years ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆199Updated 4 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- ☆155Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated last year
- List of genome assembly tools☆93Updated 3 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆154Updated this week
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- snipit: summarise snps relative to your reference sequence☆166Updated 2 weeks ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆112Updated 4 months ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 4 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 3 months ago
- Create a tree using Mash distances☆181Updated 2 years ago
- Get assembly statistics from FASTA and FASTQ files☆124Updated 2 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆102Updated last month
- Long-read mock community experiments☆104Updated 4 years ago
- High-precision TE Annotator☆149Updated last month
- Yet another k-mer analyzer☆157Updated last month