An updated pipeline for pangenome investigation
☆369Jul 2, 2026Updated last month
Alternatives and similar repositories for panaroo
Users that are interested in panaroo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆665Aug 7, 2026Updated last week
- post processing of bacterial pangenome gene presence/absence matrices☆67Jan 19, 2026Updated 6 months ago
- Build a partitioned pangenome graph from microbial genomes☆308Updated this week
- Bifrost graph gene caller.☆99Jun 18, 2026Updated last month
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆112Oct 20, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated last month
- Rapid large-scale prokaryote pan genome analysis☆379Nov 3, 2025Updated 9 months ago
- geNomad: Identification of mobile genetic elements☆328Mar 29, 2026Updated 4 months ago
- a short-read polishing tool for long-read assemblies☆224Jul 28, 2026Updated 2 weeks ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆82Sep 20, 2023Updated 2 years ago
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆347Jul 24, 2026Updated 3 weeks ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆383Updated this week
- Create a tree using Mash distances☆189Oct 24, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pan-genome wide association studies☆223May 29, 2024Updated 2 years ago
- Gene cluster comparison figure generator☆653Dec 22, 2025Updated 7 months ago
- Rapid comparison and dereplication of genomes☆351Jul 16, 2026Updated 3 weeks ago
- hybrid assembly pipeline for bacterial genomes☆650Jul 29, 2026Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆236Updated this week
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Dec 13, 2024Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆101Jul 8, 2022Updated 4 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆157Oct 2, 2025Updated 10 months ago
- Rapid haploid variant calling and core genome alignment☆594Dec 12, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Mass screening of contigs for antimicrobial and virulence genes☆507Jul 17, 2026Updated 3 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆154Jul 24, 2026Updated 3 weeks ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆221Aug 27, 2025Updated 11 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆522Aug 5, 2026Updated last week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆316Feb 3, 2026Updated 6 months ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆128Aug 6, 2026Updated last week
- A pipeline for running AMRfinderPlus and collating results into functional classes☆102Updated this week
- BSR-Based Allele Calling Algorithm☆150Jul 30, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆617May 20, 2026Updated 2 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆411Mar 2, 2026Updated 5 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆275Mar 20, 2025Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆260May 13, 2026Updated 3 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆575Feb 14, 2024Updated 2 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆264Jun 11, 2026Updated 2 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆181Apr 16, 2025Updated last year