gtonkinhill / panaroo
An updated pipeline for pangenome investigation
☆296Updated 2 months ago
Alternatives and similar repositories for panaroo:
Users that are interested in panaroo are comparing it to the libraries listed below
- A tool for generating consensus long-read assemblies for bacterial genomes☆320Updated 11 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆222Updated 2 years ago
- Scan contig files against PubMLST typing schemes☆223Updated 2 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆211Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆303Updated 3 weeks ago
- A tool to circularize genome assemblies☆241Updated last year
- BSR-Based Allele Calling Algorithm☆142Updated 2 weeks ago
- quality filtering tool for long reads☆329Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆144Updated 2 weeks ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆247Updated 5 months ago
- Synteny and Rearrangement Identifier☆378Updated this week
- Pan-genome wide association studies☆193Updated 11 months ago
- Rapid comparison and dereplication of genomes☆285Updated 3 weeks ago
- Bacterial ribosomal RNA predictor☆242Updated last year
- geNomad: Identification of mobile genetic elements☆232Updated last month
- A user-friendly workflow for phylogenomics☆212Updated 2 weeks ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆188Updated 2 months ago
- Assembly and binning of metagenomes☆235Updated this week
- Fast and accurately polish the genome generated by long reads.☆222Updated 3 months ago
- fast phage annotation program☆161Updated 3 months ago
- Pipeline for metabolic annotation of microbial genomes☆145Updated last month
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆114Updated 2 months ago
- Eukaryotic Genome Annotation Pipeline☆346Updated last month
- Pilon is an automated genome assembly improvement and variant detection tool☆361Updated 3 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆204Updated last month
- ☆206Updated 3 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆144Updated this week
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆201Updated 8 months ago
- Any Way to Show Multi genomic Synteny☆185Updated last week
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆141Updated 3 weeks ago