gtonkinhill / panarooLinks
An updated pipeline for pangenome investigation
☆304Updated 3 months ago
Alternatives and similar repositories for panaroo
Users that are interested in panaroo are comparing it to the libraries listed below
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆324Updated last year
- Scan contig files against PubMLST typing schemes☆234Updated 2 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆257Updated 6 months ago
- BSR-Based Allele Calling Algorithm☆147Updated this week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆151Updated 2 months ago
- Pan-genome wide association studies☆197Updated last year
- A user-friendly workflow for phylogenomics☆214Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆214Updated 2 months ago
- Rapid comparison and dereplication of genomes☆299Updated 2 weeks ago
- quality filtering tool for long reads☆343Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆229Updated 2 years ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆190Updated last month
- Bacterial ribosomal RNA predictor☆246Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆214Updated 3 months ago
- Application and Python module for average nucleotide identity analyses of microbes.☆214Updated last month
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 10 months ago
- Filtering and trimming of long read sequencing data☆206Updated 2 years ago
- Synteny and Rearrangement Identifier☆390Updated last month
- Build a partitioned pangenome graph from microbial genomes☆270Updated this week
- A tool to circularize genome assemblies☆242Updated last year
- Processing pipeline for pan-genome visulization and exploration☆139Updated last year
- Pipeline for metabolic annotation of microbial genomes☆147Updated 3 months ago
- Tool to plot synteny and structural rearrangements between genomes☆308Updated 2 months ago
- Assembly and binning of metagenomes☆239Updated this week
- snipit: summarise snps relative to your reference sequence☆161Updated last month
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆198Updated 4 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆154Updated last week
- Antimicrobial Resistance Identification By Assembly☆177Updated last year
- Short Read Sequence Typing for Bacterial Pathogens☆134Updated 4 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆147Updated last week