rrwick / BadreadLinks
a long read simulator that can imitate many types of read problems
☆243Updated last year
Alternatives and similar repositories for Badread
Users that are interested in Badread are comparing it to the libraries listed below
Sorting:
- ☆212Updated 2 weeks ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 9 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆220Updated last year
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆231Updated 3 weeks ago
- A genome completeness evaluation tool based on miniprot☆222Updated 3 weeks ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 11 months ago
- A bioinformatics tool for working with modified bases☆214Updated last month
- Long read / genome alignment software☆300Updated 11 months ago
- haplotypic duplication identification tool☆259Updated last year
- a short-read polishing tool for long-read assemblies☆192Updated 3 weeks ago
- Pairwise whole genome aligner☆191Updated this week
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 8 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆185Updated last month
- oxford dot plots☆158Updated this week
- base-accurate DNA sequence alignments using WFA and mashmap3☆203Updated 2 weeks ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆157Updated 5 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆171Updated last year
- Comparison of multiple long read datasets☆143Updated last month
- k-mer based assembly evaluation☆327Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆162Updated last week
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆200Updated last week
- Nanopore data assembler☆161Updated 3 years ago
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- Randomly subsample sequencing reads or alignments☆242Updated last week
- Find, circularise and annotate mitogenome from PacBio assemblies☆188Updated 5 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆194Updated 3 weeks ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆237Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆226Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆321Updated 6 months ago