a long read simulator that can imitate many types of read problems
☆293Apr 22, 2026Updated 3 months ago
Alternatives and similar repositories for Badread
Users that are interested in Badread are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nanopore sequence read simulator☆308Mar 12, 2026Updated 4 months ago
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 10 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆234Updated this week
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Mar 15, 2021Updated 5 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆164Mar 25, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- quality filtering tool for long reads☆406Sep 17, 2025Updated 10 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆157Jul 3, 2026Updated 2 weeks ago
- A genomic k-mer counter (and sequence utility) with nice features.☆174Updated this week
- Long read / genome alignment software☆329Dec 16, 2025Updated 7 months ago
- Comparison of multiple long read datasets☆177Jul 1, 2026Updated 3 weeks ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆224May 9, 2026Updated 2 months ago
- Genome size estimation from long read overlaps☆92Jun 22, 2026Updated last month
- Graph-based assembly phasing☆99Nov 25, 2025Updated 7 months ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆380Jul 9, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Plotting scripts for long read sequencing data☆557Jun 15, 2026Updated last month
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆111Apr 22, 2025Updated last year
- Align proteins to genomes with splicing and frameshift☆408Jan 5, 2026Updated 6 months ago
- Create statistic summary of an Oxford Nanopore read dataset☆137Nov 4, 2022Updated 3 years ago
- Aligns short reads using dynamic seed size with strobemers☆203Updated this week
- Sequence correction provided by ONT Research☆518May 20, 2026Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆232Sep 6, 2025Updated 10 months ago
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- De novo assembler for single molecule sequencing reads using repeat graphs☆944Apr 3, 2026Updated 3 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆115Jun 6, 2021Updated 5 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆356Jul 19, 2025Updated last year
- De novo genome assembler for long uncorrected reads☆232Nov 15, 2023Updated 2 years ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆221Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆345Sep 11, 2025Updated 10 months ago
- k-mer based assembly evaluation☆349Jul 6, 2026Updated 2 weeks ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆218Apr 24, 2026Updated 2 months ago
- Bifrost graph gene caller.☆98Jun 18, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- BWT construction and search☆129Jan 14, 2026Updated 6 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆299May 9, 2024Updated 2 years ago
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated 3 weeks ago
- a tool for simulating nanopore raw signal data☆81Mar 4, 2026Updated 4 months ago
- alignment to variation graph inducer☆163Jun 17, 2026Updated last month
- Long-read mock community experiments☆103Oct 8, 2021Updated 4 years ago