BGI-Qingdao / TGS-GapCloserLinks
A gap-closing software tool that uses long reads to enhance genome assembly.
☆219Updated last year
Alternatives and similar repositories for TGS-GapCloser
Users that are interested in TGS-GapCloser are comparing it to the libraries listed below
Sorting:
- A genome completeness evaluation tool based on miniprot☆225Updated last month
- haplotypic duplication identification tool☆260Updated last year
- Fast and accurately polish the genome generated by long reads.☆234Updated 9 months ago
- Nanopore data assembler☆161Updated 3 years ago
- ☆216Updated last month
- Any Way to Show Multi genomic Synteny☆209Updated 3 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆152Updated 3 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆160Updated 6 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 5 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆177Updated 2 weeks ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆212Updated 4 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆227Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆173Updated last year
- k-mer based assembly evaluation☆331Updated last year
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆206Updated 3 weeks ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆146Updated 9 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆231Updated 2 weeks ago
- Version 5 of the CAFE phylogenetics software☆148Updated 8 months ago
- Long read based human genomic structural variation detection with cuteSV☆273Updated last month
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆147Updated 3 months ago
- Comparison of multiple long read datasets☆145Updated last month
- Evaluation and polishing workflows for T2T genome assemblies☆139Updated 3 months ago
- High-precision TE Annotator☆136Updated this week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆160Updated 2 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆234Updated last week